Structural basis for broad substrate specificity in higher plant β-D-glucan glucohydrolases

被引:83
作者
Hrmova, M
De Gori, R
Smith, BJ
Fairweather, JK
Driguez, H
Varghese, JN
Fincher, GB
机构
[1] Univ Adelaide, Dept Plant Sci, Glen Osmond, SA 5064, Australia
[2] CSIRO, Div Hlth Sci & Nutr, Parkville, Vic 3052, Australia
[3] Walter & Eliza Hall Inst Med Res, Parkville, Vic 3050, Australia
[4] Univ Grenoble 1, CNRS, Ctr Rech Macromol Vegetales, F-38041 Grenoble 09, France
关键词
D O I
10.1105/tpc.010442
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Family 3 beta-D-glucan glucohydrolases are distributed widely in higher plants. The enzymes catalyze the hydrolytic removal of beta-D-glucosyl residues from nonreducing termini of a range of beta-D-glucans and beta-D-oligoglucosides. Their broad specificity can be explained by x-ray crystallographic data obtained from a barley beta-D-glucan glucohydrolase in complex with nonhydrolyzable S-glycoside substrate analogs and by molecular modeling of enzyme/substrate complexes. The glucosyl residue that occupies binding subsite -1 is locked tightly into a fixed position through extensive hydrogen bonding with six amino acid residues near the bottom of an active site pocket. In contrast, the glucosyl residue at subsite +1 is located between two Trip residues at the entrance of the pocket, where it is constrained less tightly. The relative flexibility of binding at subsite +1, coupled with the projection of the remainder of bound substrate away from the enzyme's surface, means that the overall active site can accommodate a range of substrates with variable spatial dispositions of adjacent beta-D-glucosyl residues. The broad specificity for glycosidic linkage type enables the enzyme to perform diverse functions during plant development.
引用
收藏
页码:1033 / 1052
页数:20
相关论文
共 78 条
[1]  
[Anonymous], [No title captured]
[2]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[3]   18TH KREBS,HANS LECTURE - KNOWLEDGE-BASED PROTEIN MODELING AND DESIGN [J].
BLUNDELL, T ;
CARNEY, D ;
GARDNER, S ;
HAYES, F ;
HOWLIN, B ;
HUBBARD, T ;
OVERINGTON, J ;
SINGH, DA ;
SIBANDA, BL ;
SUTCLIFFE, M .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1988, 172 (03) :513-520
[4]   C-13 NUCLEAR MAGNETIC-RESONANCE DATA FOR OLIGOSACCHARIDES [J].
BOCK, K ;
PEDERSEN, C ;
PEDERSEN, H .
ADVANCES IN CARBOHYDRATE CHEMISTRY AND BIOCHEMISTRY, 1984, 42 :193-225
[5]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[6]   REFINEMENT OF CRYSTAL STRUCTURES OF BETA-D-GLUCOSE AND CELLOBIOSE [J].
CHU, SSC ;
JEFFREY, GA .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL CRYSTALLOGRAPHY AND CRYSTAL CHEMISTRY, 1968, B 24 :830-&
[7]   VALIDATION OF THE GENERAL-PURPOSE TRIPOS 5.2 FORCE-FIELD [J].
CLARK, M ;
CRAMER, RD ;
VANOPDENBOSCH, N .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1989, 10 (08) :982-1012
[8]   HOST-PATHOGEN INTERACTIONS .16. PURIFICATION AND CHARACTERIZATION OF A BETA-GLUCOSYL HYDROLASE-TRANSFERASE PRESENT IN THE WALLS OF SOYBEAN CELLS [J].
CLINE, K ;
ALBERSHEIM, P .
PLANT PHYSIOLOGY, 1981, 68 (01) :207-220
[9]   Stability and oligosaccharide binding of the N1 cellulose-binding domain of Cellulomonas fimi endoglucanase CenC [J].
Creagh, AL ;
Koska, J ;
Johnson, PE ;
Tomme, P ;
Joshi, MD ;
McIntosh, LP ;
Kilburn, DG ;
Haynes, CA .
BIOCHEMISTRY, 1998, 37 (10) :3529-3537
[10]   Binding of the cellulose-binding domain of exoglucanase Cex from Cellulomonas fimi to insoluble microcrystalline cellulose is entropically driven [J].
Creagh, AL ;
Ong, E ;
Jervis, E ;
Kilburn, DG ;
Haynes, CA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (22) :12229-12234