SIMToolbox: a MATLAB toolbox for structured illumination fluorescence microscopy

被引：61

作者：

Krizek, Pavel ^{[1
]}

Lukes, Tomas ^{[2
,3
]}

Ovesny, Martin ^{[1
]}

Fliegel, Karel ^{[2
]}

Hagen, Guy M. ^{[4
]}

机构：

[1] Charles Univ Prague, Fac Med 1, Prague 12800, Czech Republic

[2] Czech Tech Univ, Fac Elect Engn, Dept Radioelect, Prague 16627, Czech Republic

[3] Ecole Polytech Fed Lausanne, Lab Opt Biomed, CH-1015 Lausanne, Switzerland

[4] Univ Colorado, UCCS Ctr BioFrontiers Inst, Colorado Springs, CO 80907 USA

来源：

BIOINFORMATICS | 2016年 / 32卷 / 02期

关键词：

D O I：

10.1093/bioinformatics/btv576

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

SIMToolbox is an open-source, modular set of functions for MATLAB equipped with a user-friendly graphical interface and designed for processing two-dimensional and three-dimensional data acquired by structured illumination microscopy (SIM). Both optical sectioning and super-resolution applications are supported. The software is also capable of maximum a posteriori probability image estimation (MAP-SIM), an alternative method for reconstruction of structured illumination images. MAP-SIM can potentially reduce reconstruction artifacts, which commonly occur due to refractive index mismatch within the sample and to imperfections in the illumination.

引用

页码：318 / 320

页数：3

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