Postnatal DNA demethylation and its role in tissue maturation

被引:61
作者
Reizel, Yitzhak [1 ,2 ,3 ]
Sabag, Ofra [1 ]
Skversky, Yael [1 ]
Spiro, Adam [1 ]
Steinberg, Benjamin [1 ]
Bernstein, Diana [2 ,3 ]
Wang, Amber [2 ,3 ]
Kieckhaefer, Julia [2 ,3 ]
Li, Catherine [4 ]
Pikarsky, Eli [1 ]
Levin-Klein, Rena [5 ]
Goren, Alon [4 ,6 ]
Rajewsky, Klaus [7 ]
Kaestner, Klaus H. [2 ,3 ]
Cedar, Howard [1 ]
机构
[1] Hebrew Univ Jerusalem, Sch Med, Dept Dev Biol & Canc Res, POB 12272, IL-91120 Jerusalem, Israel
[2] Univ Penn, Perelman Sch Med, Dept Genet, 12-126 Translat Res Ctr,3400 Civ Ctr Blvd, Philadelphia, PA 19104 USA
[3] Univ Penn, Perelman Sch Med, Inst Diabet Obes & Metab, 12-126 Translat Res Ctr,3400 Civ Ctr Blvd, Philadelphia, PA 19104 USA
[4] Broad Inst Harvard & MIT, BTL, Cambridge, MA 02142 USA
[5] Univ Minnesota, Dept Biochem Mol Biol & Biophys, Minneapolis, MN 55455 USA
[6] Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA
[7] Immune Regulat & Canc Max Delbruck Ctr, Mol Med MDC, Robert Rossle Str 10, D-13092 Berlin, Germany
来源
NATURE COMMUNICATIONS | 2018年 / 9卷
基金
美国国家卫生研究院; 欧洲研究理事会; 以色列科学基金会;
关键词
EMBRYONIC STEM-CELLS; TET PROTEINS; EPIGENETIC MEMORY; HUMAN GENOME; METHYLATION; MOUSE; DIFFERENTIATION; TRANSCRIPTION; OXIDATION; CHROMATIN;
D O I
10.1038/s41467-018-04456-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Development in mammals is accompanied by specific de novo and demethylation events that are thought to stabilize differentiated cell phenotypes. We demonstrate that a large percentage of the tissue-specific methylation pattern is generated postnatally. Demethylation in the liver is observed in thousands of enhancer-like sequences associated with genes that undergo activation during the first few weeks of life. Using. conditional gene ablation strategy we show that the removal of these methyl groups is stable and necessary for assuring proper hepatocyte gene expression and function through its effect on chromatin accessibility. These postnatal changes in methylation come about through exposure to hormone signaling. These results define the molecular rules of 5-methyl-cytosine regulation as an epigenetic mechanism underlying cellular responses to. changing environment.
引用
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页数:11
相关论文
共 52 条
  • [1] Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes
    Ackermann, Amanda M.
    Wang, Zhiping
    Schug, Jonathan
    Naji, Ali
    Kaestner, Klaus H.
    [J]. MOLECULAR METABOLISM, 2016, 5 (03): : 233 - 244
  • [2] DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes
    Aran, Dvir
    Sabato, Sivan
    Hellman, Asaf
    [J]. GENOME BIOLOGY, 2013, 14 (03)
  • [3] Aging-Dependent Demethylation of Regulatory Elements Correlates with Chromatin State and Improved β Cell Function
    Avrahami, Dana
    Li, Changhong
    Zhang, Jia
    Schug, Jonathan
    Avrahami, Ran
    Rao, Shilpa
    Stadler, Michael B.
    Burger, Lukas
    Schuebeler, Dirk
    Glaser, Benjamin
    Kaestner, Klaus H.
    [J]. CELL METABOLISM, 2015, 22 (04) : 619 - 632
  • [4] Notes on the role of dynamic DNA methylation in mammalian development
    Bestor, Timothy H.
    Edwards, John R.
    Boulard, Mathieu
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (22) : 6796 - 6799
  • [5] Functional beta-cell maturation is marked by an increased glucose threshold and by expression of urocortin 3
    Blum, Barak
    Hrvatin, Sinisa
    Schuetz, Christian
    Bonal, Claire
    Rezania, Alireza
    Melton, Douglas A.
    [J]. NATURE BIOTECHNOLOGY, 2012, 30 (03) : 261 - 264
  • [6] Boyle P, 2012, GENOME BIOL, V13, DOI [10.1186/gb-2012-13-10-R92, 10.1186/gb-2012-13-10-r92]
  • [7] A muscle-specific insulin receptor knockout exhibits features of the metabolic syndrome of NIDDM without altering glucose tolerance
    Bruning, JC
    Michael, MD
    Winnay, JN
    Hayashi, T
    Horsch, D
    Accili, D
    Goodyear, LJ
    Kahn, CR
    [J]. MOLECULAR CELL, 1998, 2 (05) : 559 - 569
  • [8] Buenrostro JD, 2013, NAT METHODS, V10, P1213, DOI [10.1038/NMETH.2688, 10.1038/nmeth.2688]
  • [9] Extensive Epigenetic Changes Accompany Terminal Differentiation of Mouse Hepatocytes After Birth
    Cannon, Matthew V.
    Pilarowski, Genay
    Liu, Xiuli
    Serre, David
    [J]. G3-GENES GENOMES GENETICS, 2016, 6 (11): : 3701 - 3709
  • [10] Programming of DNA Methylation Patterns
    Cedar, Howard
    Bergman, Yehudit
    [J]. ANNUAL REVIEW OF BIOCHEMISTRY, VOL 81, 2012, 81 : 97 - 117