Structural basis for gating pore current in periodic paralysis

被引:51
作者
Jiang, Daohua [1 ]
El-Din, Tamer M. Gamal [1 ]
Ing, Christopher [2 ,3 ]
Lu, Peilong [1 ,4 ]
Pomes, Regis [2 ,3 ]
Zheng, Ning [1 ,5 ]
Catterall, William A. [1 ]
机构
[1] Univ Washington, Dept Pharmacol, Seattle, WA 98195 USA
[2] Hosp Sick Children, Mol Med, Toronto, ON, Canada
[3] Univ Toronto, Dept Biochem, Toronto, ON, Canada
[4] Univ Washington, Inst Prot Design, Seattle, WA 98195 USA
[5] Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA
基金
美国国家卫生研究院; 加拿大健康研究院;
关键词
PARTICLE MESH EWALD; VOLTAGE SENSOR; MOLECULAR-DYNAMICS; CRYSTAL-STRUCTURE; SODIUM-CHANNEL; ION PERMEATION; MOUSE MODEL; NA+; VALIDATION; PHARMACOLOGY;
D O I
10.1038/s41586-018-0120-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Potassium-sensitive hypokalaemic and normokalaemic periodic paralysis are inherited skeletal muscle diseases characterized by episodes of flaccid muscle weakness(1,2). They are caused by single mutations in positively charged residues ('gating charges') in the S4 transmembrane segment of the voltage sensor of the voltage-gated sodium channel Na(v)1.4 or the calcium channel Ca(v)1.1(1,2). Mutations of the outermost gating charges (R1 and R2) cause hypokalaemic periodic paralysis(1,2) by creating a pathogenic gating pore in the voltage sensor through which cations leak in the resting state(3,4). Mutations of the third gating charge (R3) cause normokalaemic periodic paralysis(5) owing to cation leak in both activated and inactivated states(6). Here we present high-resolution structures of the model bacterial sodium channel Na(v)Ab with the analogous gating-charge mutations(7,8), which have similar functional effects as in the human channels. The R2G and R3G mutations have no effect on the backbone structures of the voltage sensor, but they create an aqueous cavity near the hydrophobic constriction site that controls gating charge movement through the voltage sensor. The R3G mutation extends the extracellular aqueous cleft through the entire length of the activated voltage sensor, creating an aqueous path through the membrane. Conversely, molecular modelling shows that the R2G mutation creates a continuous aqueous path through the membrane only in the resting state. Crystal structures of Na(v)Ab(R2G) in complex with guanidinium define a potential drug target site. Molecular dynamics simulations illustrate the mechanism of Na+ permeation through the mutant gating pore in concert with conformational fluctuations of the gating charge R4. Our results reveal pathogenic mechanisms of periodic paralysis at the atomic level and suggest designs of drugs that may prevent ionic leak and provide symptomatic relief from hypokalaemic and normokalaemic periodic paralysis.
引用
收藏
页码:590 / +
页数:17
相关论文
共 55 条
  • [21] VMD: Visual molecular dynamics
    Humphrey, W
    Dalke, A
    Schulten, K
    [J]. JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1996, 14 (01) : 33 - 38
  • [22] Alchembed: A Computational Method for Incorporating Multiple Proteins into Complex Lipid Geometries
    Jefferys, Elizabeth
    Sands, Zara A.
    Shi, Jiye
    Sansom, Mark S. P.
    Fowler, Philip W.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2015, 11 (06) : 2743 - 2754
  • [23] COMPARISON OF SIMPLE POTENTIAL FUNCTIONS FOR SIMULATING LIQUID WATER
    JORGENSEN, WL
    CHANDRASEKHAR, J
    MADURA, JD
    IMPEY, RW
    KLEIN, ML
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1983, 79 (02) : 926 - 935
  • [24] Pathophysiological role of omega pore current in channelopathies
    Jurkat-Rott, Karin
    Groome, James
    Lehmann-Horn, Frank
    [J]. FRONTIERS IN PHARMACOLOGY, 2012, 3
  • [25] Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
    Klauda, Jeffery B.
    Venable, Richard M.
    Freites, J. Alfredo
    O'Connor, Joseph W.
    Tobias, Douglas J.
    Mondragon-Ramirez, Carlos
    Vorobyov, Igor
    MacKerell, Alexander D., Jr.
    Pastor, Richard W.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (23) : 7830 - 7843
  • [26] All-atom empirical potential for molecular modeling and dynamics studies of proteins
    MacKerell, AD
    Bashford, D
    Bellott, M
    Dunbrack, RL
    Evanseck, JD
    Field, MJ
    Fischer, S
    Gao, J
    Guo, H
    Ha, S
    Joseph-McCarthy, D
    Kuchnir, L
    Kuczera, K
    Lau, FTK
    Mattos, C
    Michnick, S
    Ngo, T
    Nguyen, DT
    Prodhom, B
    Reiher, WE
    Roux, B
    Schlenkrich, M
    Smith, JC
    Stote, R
    Straub, J
    Watanabe, M
    Wiórkiewicz-Kuczera, J
    Yin, D
    Karplus, M
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (18) : 3586 - 3616
  • [27] MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories
    McGibbon, Robert T.
    Beauchamp, Kyle A.
    Harrigan, Matthew P.
    Klein, Christoph
    Swails, Jason M.
    Hernandez, Carlos X.
    Schwantes, Christian R.
    Wang, Lee-Ping
    Lane, Thomas J.
    Pande, Vijay S.
    [J]. BIOPHYSICAL JOURNAL, 2015, 109 (08) : 1528 - 1532
  • [28] Mechanisms Responsible for ω-Pore Currents in Cav Calcium Channel Voltage-Sensing Domains
    Monteleone, Stefania
    Lieb, Andreas
    Pinggera, Alexandra
    Negro, Giulia
    Fuchs, Julian E.
    Hofer, Florian
    Striessnig, Joerg
    Tuluc, Petronel
    Liedl, Klaus R.
    [J]. BIOPHYSICAL JOURNAL, 2017, 113 (07) : 1485 - 1495
  • [29] Mutations in the Voltage Sensors of Domains I and II of NaV1.5 that are Associated with Arrhythmias and Dilated Cardiomyopathy Generate Gating Pore Currents
    Moreau, Adrien
    Gosselin-Badaroudine, Pascal
    Boutjdir, Mohamed
    Chahine, Mohamed
    [J]. FRONTIERS IN PHARMACOLOGY, 2015, 6
  • [30] Biophysics, pathophysiology, and pharmacology of ion channel gating pores
    Moreau, Adrien
    Gosselin-Badaroudine, Pascal
    Chahine, Mohamed
    [J]. FRONTIERS IN PHARMACOLOGY, 2014, 5