Restricted-Variance Constrained, Reaction Path, and Transition State Molecular Optimizations Using Gradient-Enhanced Kriging

被引:26
作者
Galvan, Ignacio Fdez [1 ]
Raggi, Gerardo [1 ]
Lindh, Roland [1 ]
机构
[1] Uppsala Univ, Dept Chem, BMC, S-75123 Uppsala, Sweden
基金
瑞典研究理事会;
关键词
FINDING SADDLE-POINTS; DISSOCIATIVE ADSORPTION; ALGORITHM; LOCATION; MATRIX;
D O I
10.1021/acs.jctc.0c01163
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Gaussian process regression has recently been explored as an alternative to standard surrogate models in molecular equilibrium geometry optimization. In particular, the gradient-enhanced Kriging approach in association with internal coordinates, restricted-variance optimization, and an efficient and fast estimate of hyperparameters has demonstrated performance on par or better than standard methods. In this report, we extend the approach to constrained optimizations and transition states and benchmark it for a set of reactions. We compare the performance of the newly developed method with the standard techniques in the location of transition states and in constrained optimizations, both isolated and in the context of reaction path computation. The results show that the method outperforms the current standard in efficiency as well as in robustness.
引用
收藏
页码:571 / 582
页数:12
相关论文
共 66 条
[1]  
Anglada JM, 1997, J COMPUT CHEM, V18, P992, DOI 10.1002/(SICI)1096-987X(199706)18:8<992::AID-JCC3>3.0.CO
[2]  
2-L
[3]  
[Anonymous], 1970, IMA J APPL MATH, DOI [DOI 10.1093/IMAMAT/6.1.76, 10.1093/IMAMAT/6.1.76]
[4]   Atomic Cholesky decompositions: A route to unbiased auxiliary basis sets for density fitting approximation with tunable accuracy and efficiency [J].
Aquilante, Francesco ;
Gagliardi, Laura ;
Pedersen, Thomas Bondo ;
Lindh, Roland .
JOURNAL OF CHEMICAL PHYSICS, 2009, 130 (15)
[5]   AN ALGORITHM FOR THE LOCATION OF TRANSITION-STATES [J].
BAKER, J .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1986, 7 (04) :385-395
[6]  
Baker J, 1996, J COMPUT CHEM, V17, P888, DOI 10.1002/(SICI)1096-987X(199605)17:7<888::AID-JCC12>3.0.CO
[7]  
2-7
[8]   The efficient optimization of molecular geometries using redundant internal coordinates [J].
Bakken, V ;
Helgaker, T .
JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (20) :9160-9174
[9]   On the automatic restricted-step rational-function-optimization method [J].
Besalú, E ;
Bofill, JM .
THEORETICAL CHEMISTRY ACCOUNTS, 1998, 100 (5-6) :265-274
[10]   UPDATED HESSIAN MATRIX AND THE RESTRICTED STEP METHOD FOR LOCATING TRANSITION STRUCTURES [J].
BOFILL, JM .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1994, 15 (01) :1-11