RETRACTED: Cytosol has a small effect on protein backbone dynamics (Retracted Article. See vol 46, pg 8206, 2007)

被引:11
作者
Bryant, Julie E.
Lecomte, Juliette T. J.
Lee, Andrew L.
Young, Gregory B.
Pielak, Gary J. [1 ]
机构
[1] Univ N Carolina, Dept Chem, Div Med Chem & Nat Prod, Chapel Hill, NC 27599 USA
[2] Univ N Carolina, Dept Biochem & Biophys, Div Med Chem & Nat Prod, Chapel Hill, NC 27599 USA
[3] Univ N Carolina, Lineberger Comprehens Canc Ctr, Chapel Hill, NC 27599 USA
[4] Penn State Univ, Dept Chem, University Pk, PA 16802 USA
关键词
D O I
10.1021/bi060547b
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Cells are crowded with macromolecules, yet most biophysical information about proteins is obtained in dilute solution. To determine the impact of this dichotomy, we used nuclear magnetic resonance spectroscopy to measure the backbone N-15 T-1 and T-2 relaxation times and the {H-1}-N-15 nuclear Overhauser enhancement (nOe) of uniformly N-15-enriched apocytochrome b(5) in living Escherichia coli and in dilute solution. These data allowed us to assess the backbone dynamics of this partially folded protein in cells and in dilute solution. The two data sets were analyzed by using the model-free approach. Transfer from dilute solution to the cytosol has a quantitative effect on T-1, T-2, and nOe values. Most of the effects are attributed to an increase in the overall correlation time, caused by the increased viscosity of the cytosol compared to that of the dilute solution. Our main conclusion is that the cytosol does not alter the pattern of backbone dynamics of apocytochrome b5. Increases in the time scale of both the picosecond and millisecond motions are observed, but the increases are less than similar to 30%.
引用
收藏
页码:10085 / 10091
页数:7
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