Adaptive Lambda Square Dynamics Simulation: An Efficient Conformational Sampling Method for Biomolecules

被引：0
作者：
Ikebe, Jinzen [1 ]
Sakuraba, Shun [1 ]
Kono, Hidetoshi [1 ]
机构：
[1] Japan Atom Energy Agcy, Kyoto, Japan
来源：
BIOPHYSICAL JOURNAL | 2014年 / 106卷 / 02期
关键词：
D O I：
10.1016/j.bpj.2013.11.2280
中图分类号：
Q6 [生物物理学];
学科分类号：
071011 ;
摘要：
引用
收藏
页码：405A / 405A
页数：1
相关论文
共 50 条
  • [21] Improved conformational sampling through an efficient combination of mean-field simulation approaches
    Cheng, XL
    Hornak, V
    Simmerling, C
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (01) : 426 - 437
  • [22] Replica exchanging self-guided Langevin dynamics for efficient and accurate conformational sampling
    Wu, Xiongwu
    Hodoscek, Milan
    Brooks, Bernard R.
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2012, 137 (04) : 044106
  • [23] Conformational sampling of CDR-H3 in antibodies by multicanonical molecular dynamics simulation
    Shirai, H
    Nakajima, N
    Higo, J
    Kidera, A
    Nakamura, H
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1998, 278 (02) : 481 - 496
  • [24] AN EFFICIENT MULTIPARTICLE DIFFUSION SIMULATION BY AN ADAPTIVE MULTIGRID METHOD
    PANTIC, D
    MIJALKOVIC, S
    STOJADINOVIC, N
    [J]. MICROELECTRONICS JOURNAL, 1994, 25 (02) : 79 - 97
  • [25] An Efficient Adaptive Importance Sampling Method for SRAM and Analog Yield Analysis
    Shi, Xiao
    Yan, Hao
    Wang, Jinxin
    Zhang, Jiajia
    Shi, Longxing
    He, Lei
    [J]. IEEE TRANSACTIONS ON COMPUTER-AIDED DESIGN OF INTEGRATED CIRCUITS AND SYSTEMS, 2020, 39 (12) : 4999 - 5010
  • [26] An efficient reliability method combining adaptive importance sampling and Kriging metamodel
    Zhao, Hailong
    Yue, Zhufeng
    Liu, Yongshou
    Gao, Zongzhan
    Zhang, Yishang
    [J]. APPLIED MATHEMATICAL MODELLING, 2015, 39 (07) : 1853 - 1866
  • [27] Parallel Cascade Selection Molecular Dynamics for Efficient Conformational Sampling and Free Energy Calculation of Proteins
    Kitao, Akio
    Harada, Ryuhei
    Nishihara, Yasutaka
    Duy Phuoc Tran
    [J]. PROCEEDINGS OF THE INTERNATIONAL CONFERENCE OF COMPUTATIONAL METHODS IN SCIENCES AND ENGINEERING 2016 (ICCMSE-2016), 2016, 1790
  • [28] AN EFFICIENT TRANSIENT SIMULATION METHOD FOR A VOLUME DYNAMICS MODEL
    Kurosaki, Masahiro
    Sasamoto, Minoru
    Asaka, Kentaro
    Nakamura, Keiko
    Kakiuchi, Daiki
    [J]. PROCEEDINGS OF THE ASME TURBO EXPO: TURBOMACHINERY TECHNICAL CONFERENCE AND EXPOSITION, 2018, VOL 6, 2018,
  • [29] An Efficient Modeling Method for the Simulation of Ball Bearing Dynamics
    Chen, Shi
    He, Ke
    Cai, Xiaojiang
    Zhang, Zhinan
    [J]. JOURNAL OF COMPUTATIONAL AND NONLINEAR DYNAMICS, 2022, 17 (11):
  • [30] ACCELERATED MOLECULAR DYNAMICS: AN EFFICIENT ENHANCED SAMPLING METHOD FOR BIOMOLECULAR SIMULATIONS
    Pierce, Levi C. T.
    Sinko, William
    McCammon, J. Andrew
    [J]. BIOMOLECULAR FORMS AND FUNCTIONS: A CELEBRATION OF 50 YEARS OF THE RAMACHANDRAN MAP, 2013, : 443 - 454
12345