Adaptive Lambda Square Dynamics Simulation: An Efficient Conformational Sampling Method for Biomolecules

被引:0
|
作者
Ikebe, Jinzen [1 ]
Sakuraba, Shun [1 ]
Kono, Hidetoshi [1 ]
机构
[1] Japan Atom Energy Agcy, Kyoto, Japan
关键词
D O I
10.1016/j.bpj.2013.11.2280
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
引用
收藏
页码:405A / 405A
页数:1
相关论文
共 50 条
  • [1] Adaptive Lambda Square Dynamics Simulation: An Efficient Conformational Sampling Method for Biomolecules
    Ikebe, Jinzen
    Sakuraba, Shun
    Kono, Hidetoshi
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2014, 35 (01) : 39 - 50
  • [2] Towards fast, rigorous and efficient conformational sampling of biomolecules: Advances in accelerated molecular dynamics
    Doshi, Urmi
    Hamelberg, Donald
    BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2015, 1850 (05): : 878 - 888
  • [3] Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules
    Hamelberg, D
    Mongan, J
    McCammon, JA
    JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (24): : 11919 - 11929
  • [4] An efficient conformational sampling method for homology modeling
    Han, Rongsheng
    Leo-Macias, Alejandra
    Zerbino, Daniel
    Bastolla, Ugo
    Contreras-Moreira, Bruno
    Ortiz, Angel R.
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 71 (01) : 175 - 188
  • [5] Adaptive Sampling for Efficient MPSoC Architecture Simulation
    Tawk, Melhem
    Ibrahim, Khaled Z.
    Niar, Smail
    PROCEEDINGS OF MASCOTS '07: 15TH INTERNATIONAL SYMPOSIUM ON MODELING, ANALYSIS, AND SIMULATION OF COMPUTER AND TELECOMMUNICATION SYSTEMS, 2007, : 186 - +
  • [6] Efficient Conformational Sampling in Explicit Solvent Using a Hybrid Replica Exchange Molecular Dynamics Method
    Chaudhury, Sidhartha
    Olson, Mark A.
    Tawa, Gregory
    Wallqvist, Anders
    Lee, Michael S.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (02) : 677 - 687
  • [7] Efficient conformational sampling in explicit solvent using a hybrid replica exchange molecular dynamics method
    Chaudhury, Sidhartha
    Olson, Mark A.
    Tawa, Gregory
    Wallqvist, Anders
    Lee, Michael S.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2011, 241
  • [8] Simulated annealing coupled replica exchange molecular dynamics-An efficient conformational sampling method
    Kannan, Srinivasaraghavan
    Zacharias, Martin
    JOURNAL OF STRUCTURAL BIOLOGY, 2009, 166 (03) : 288 - 294
  • [9] Network visualization of conformational sampling during molecular dynamics simulation
    Ahlstrom, Logan S.
    Baker, Joseph Lee
    Ehrlich, Kent
    Campbell, Zachary T.
    Patel, Sunita
    Vorontsov, Ivan I.
    Tama, Florence
    Miyashita, Osamu
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2013, 46 : 140 - 149
  • [10] Efficient molecular dynamics of biomolecules using a swarm-enhanced sampling scheme
    Bryce, Richard
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 252