Human Circulating miRNAs Real-time qRT-PCR-based Analysis: An Overview of Endogenous Reference Genes Used for Data Normalization

被引:89
作者
Donati, Simone [1 ]
Ciuffi, Simone [1 ]
Brandi, Maria L. [1 ,2 ]
机构
[1] Univ Study Florence, Dept Expt & Clin Biomed Sci Mario Serio, Viale Pieraccini 6, I-50139 Florence, Italy
[2] Univ Hosp Florence, Unit Bone & Mineral Dis, Largo Palagi 1, I-50139 Florence, Italy
关键词
circulating microRNAs; endogenous reference genes; non-invasive diagnostic biomarkers; real-time qRT-PCR; POLYMERASE-CHAIN-REACTION; EXPRESSION ANALYSIS; SERUM MICRORNA; TARGET GENES; SMALL RNAS; CANCER; BIOMARKERS; PLASMA; IDENTIFICATION; EXOSOMES;
D O I
10.3390/ijms20184353
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
miRNAs are small non-coding RNAs of about 18-25 nucleotides that negatively regulate gene expression at the post-transcriptional level. It was reported that a deregulation of their expression patterns correlates to the onset and progression of various diseases. Recently, these molecules have been identified in a great plethora of biological fluids, and have also been proposed as potential diagnostic and prognostic biomarkers. Actually, real time quantitative polymerase chain reaction is the most widely used approach for circulating miRNAs (c-miRNAs) expression profiling. Nevertheless, the debate on the choice of the most suitable endogenous reference genes for c-miRNAs expression levels normalization is still open. In this regard, numerous research groups are focusing their efforts upon identifying specific, highly stable, endogenous c-mRNAs. The aim of this review is to provide an overview on the reference genes currently used in the study of various pathologies, offering to researchers the opportunity to select the appropriate molecules for c-miRNA levels normalization, when their choosing is based upon literature data.
引用
收藏
页数:19
相关论文
共 92 条
[21]   Biological principles of microRNA-mediated regulation: shared themes amid diversity [J].
Flynt, Alex S. ;
Lai, Eric C. .
NATURE REVIEWS GENETICS, 2008, 9 (11) :831-842
[22]   A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence [J].
Forman, Joshua J. ;
Legesse-Miller, Aster ;
Coller, Hilary A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (39) :14879-14884
[23]   The Majority of MicroRNAs Detectable in Serum and Saliva Is Concentrated in Exosomes [J].
Gallo, Alessia ;
Tandon, Mayank ;
Alevizos, Ilias ;
Illei, Gabor G. .
PLOS ONE, 2012, 7 (03)
[24]   Recent progress toward the use of circulating microRNAs as clinical biomarkers [J].
Ghai, Vikas ;
Wang, Kai .
ARCHIVES OF TOXICOLOGY, 2016, 90 (12) :2959-2978
[25]   MicroRNA expression in serum samples of sulfur mustard veterans as a diagnostic gateway to improve care [J].
Gharbi, Sedigheh ;
Khateri, Shahriar ;
Soroush, Mohammad Reza ;
Shamsara, Mehdi ;
Naeli, Parisa ;
Najafi, Ali ;
Korsching, Eberhard ;
Mowla, Seyed Javad .
PLOS ONE, 2018, 13 (03)
[26]   Regulation of microRNA biogenesis [J].
Ha, Minju ;
Kim, V. Narry .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2014, 15 (08) :509-524
[27]   Circulating microRNAs as Novel Minimally Invasive Biomarkers for Breast Cancer [J].
Heneghan, Helen M. ;
Miller, Nicola ;
Lowery, Aoife J. ;
Sweeney, Karl J. ;
Newell, John ;
Kerin, Michael J. .
ANNALS OF SURGERY, 2010, 251 (03) :499-505
[28]   miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes [J].
Hsu, Paul W. C. ;
Huang, Hsien-Da ;
Hsu, Sheng-Da ;
Lin, Li-Zen ;
Tsou, Ann-Ping ;
Tseng, Ching-Ping ;
Stadler, Peter F. ;
Washietl, Stefan ;
Hofacker, Ivo L. .
NUCLEIC ACIDS RESEARCH, 2006, 34 :D135-D139
[29]   Human miR-1228 as a stable endogenous control for the quantification of circulating microRNAs in cancer patients [J].
Hu, Jie ;
Wang, Zheng ;
Liao, Bo-Yi ;
Yu, Lei ;
Gao, Xue ;
Lu, Shaohua ;
Wang, Shuyang ;
Dai, Zhi ;
Zhang, Xin ;
Chen, Qing ;
Qiu, Shuang-Jian ;
Wu, Ying ;
Zhu, Hongguang ;
Fan, Jia ;
Zhou, Jian ;
Wang, Jiping .
INTERNATIONAL JOURNAL OF CANCER, 2014, 135 (05) :1187-1194
[30]   Serum microRNA profiling and breast cancer risk: the use of miR-484/191 as endogenous controls [J].
Hu, Zhibin ;
Dong, Jing ;
Wang, Li-E ;
Ma, Hongxia ;
Liu, Jibin ;
Zhao, Yang ;
Tang, Jinhai ;
Chen, Xi ;
Dai, Juncheng ;
Wei, Qingyi ;
Zhang, Chenyu ;
Shen, Hongbing .
CARCINOGENESIS, 2012, 33 (04) :828-834