A surprisingly complex aqueous chemistry of the simplest amino acid. A pulse radiolysis and theoretical study on H/D kinetic isotope effects in the reaction of glycine anions with hydroxyl radicals

被引:26
作者
Stefanic, I. [2 ]
Ljubic, I. [1 ]
Bonifacic, M. [1 ]
Sabljic, A. [1 ]
Asmus, K. -D. [3 ]
Armstrong, D. A. [4 ]
机构
[1] Rudjer Boskovic Inst, Dept Phys Chem, Zagreb 10000, Croatia
[2] Culver Acad, Culver, IN USA
[3] Adam Mickiewicz Univ, Fac Chem, PL-60780 Poznan, Poland
[4] Univ Calgary, Dept Chem, Calgary, AB T2N 1N4, Canada
关键词
REDUCTION POTENTIALS; HYDROGEN ABSTRACTION; METATHESIS REACTIONS; ACTIVATION-ENERGIES; MAGNETIC-PROPERTIES; RATE CONSTANTS; BASIS-SET; OXIDATION; STATE; OH;
D O I
10.1039/b816353g
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A pulse radiolysis study was carried out of the reaction rate constants and kinetic isotope effects of hydroxyl-radical-induced H/D abstraction from the most-simple a-amino acid glycine in its anionic form in water. The rate constants and yields of three predominantly formed radical products, glycyl (NH2-(CH)-C-circle-CO2-), aminomethyl (NH2-(CH2)-C-circle), and aminyl ((NH)-N-circle-CH2-CO2-) radicals, as well as of their partially or fully deuterated analogs, were found to be of comparable magnitude. The primary, secondary, and primary/secondary H/D kinetic isotope effects on the rate constants were determined with respect to each of the three radicals. The unusual variety of products for such an elementary reaction between two small and simple species indicates a complex mechanism with several reactions taking place simultaneously. Thus, a theoretical modeling of the reaction mechanism and kinetics in the gas- and aqueous phase was performed by using the unrestricted density functional theory with the BB1K functional (employing the polarizable continuum model for the aqueous phase), unrestricted coupled cluster UCCSD(T) method, and improved canonical variational theory. Several hydrogen-bonded prereaction complexes and transition states were detected. In particular, the calculations pointed to a significant mechanistic role of the three-electron two-orbital (sigma/sigma* N therefore O) hemibonded prereaction complexes in the aqueous phase. A good agreement with the experimental rate constants and kinetic isotope effects was achieved by downshifting the calculated reaction barriers by 3 kcal mol(-1) and damping the NH(D) stretching frequency by a factor of 0.86.
引用
收藏
页码:2256 / 2267
页数:12
相关论文
共 56 条
[1]  
[Anonymous], 2017, J MOL STRUCT, DOI DOI 10.1016/J.MOLSTRUC.2017.03.014
[2]   AMINOALKYL AND ALKYLAMINIUM FREE-RADICALS AND RELATED SPECIES - STRUCTURES, THERMODYNAMIC PROPERTIES, REDUCTION POTENTIALS, AND AQUEOUS FREE-ENERGIES [J].
ARMSTRONG, DA ;
RAUK, A ;
YU, DK .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1993, 115 (02) :666-673
[3]   Oxide radical anion reactivity with aliphatic amino compounds in aqueous solution:: Comparison of H-atom abstraction from C-H and N-H groups by •O- and •OH radicals [J].
Armstrong, DA ;
Asmus, KD ;
Bonifacic, M .
JOURNAL OF PHYSICAL CHEMISTRY A, 2004, 108 (12) :2238-2246
[4]   SOLUTION THERMOCHEMISTRY OF THE RADICALS OF GLYCINE [J].
ARMSTRONG, DA ;
RANK, A ;
YU, D .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1995, (03) :553-560
[5]   REACTION OF H-ATOMS WITH CHELATORS IN HIGHLY BASIC SOLUTION - H-2 PRODUCTION IN HIGH-LEVEL LIQUID WASTE SIMULANTS [J].
BARNABAS, F ;
CERNY, E ;
JONAH, CD ;
MEISEL, D ;
SAUER, MC .
RADIATION PHYSICS AND CHEMISTRY, 1995, 46 (01) :57-60
[6]   A new definition of cavities for the computation of solvation free energies by the polarizable continuum model [J].
Barone, V ;
Cossi, M ;
Tomasi, J .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (08) :3210-3221
[7]   Density-functional thermochemistry .4. A new dynamical correlation functional and implications for exact-exchange mixing [J].
Becke, AD .
JOURNAL OF CHEMICAL PHYSICS, 1996, 104 (03) :1040-1046
[8]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[9]   Existence of negative activation energies in simple bimolecular metathesis reactions and some observations on too-fast reactions [J].
Benson, SW ;
Dobis, O .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (27) :5175-5181
[10]   Ozone and hydroxyl radicals induced oxidation of glycine [J].
Berger, P ;
Leitner, NKV ;
Doré, M ;
Legube, B .
WATER RESEARCH, 1999, 33 (02) :433-441