Single-cell Sequencing in the Field of Stem Cells

被引:15
作者
Chen, Tian [1 ,2 ]
Li, Jiawei [1 ,2 ]
Jia, Yichen [1 ,2 ]
Wang, Jiyan [4 ]
Sang, Ruirui [5 ]
Zhang, Yi [2 ,3 ]
Rong, Ruiming [1 ,2 ]
机构
[1] Fudan Univ, Zhongshan Hosp, Dept Urol, 180 Fenglin Rd, Shanghai 200032, Peoples R China
[2] Shanghai Key Lab Organ Transplantat, Shanghai, Peoples R China
[3] Fudan Univ, Zhongshan Hosp, Biomed Res Ctr, Inst Clin Sci, 180 Fenglin Rd, Shanghai 200032, Peoples R China
[4] Shanghai Publ Hlth Clin Ctr, Dept Urol, Shanghai, Peoples R China
[5] Fudan Univ, Zhongshan Hosp, Dept Transfus, Shanghai, Peoples R China
基金
中国国家自然科学基金; 国家重点研发计划;
关键词
Single-cell sequencing; pluripotent stem cell; tissue-specific stem cell; cancer stem cell; RNA sequencing; heterogeneity; MESSENGER-RNA-SEQ; GENOME-WIDE; EVOLUTION; EMBRYOS; HETEROGENEITY; DIVERSITY; RENEWAL;
D O I
10.2174/1389202921999200624154445
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Variation and heterogeneity between cells are the basic characteristics of stem cells. Traditional sequencing analysis methods often cover up this difference. Single-cell sequencing technology refers to the technology of high-throughput sequencing analysis of genomes at the single-cell level. It can effectively analyze cell heterogeneity and identify a small number of cell populations. With the continuous progress of cell sorting, nucleic acid extraction and other technologies, single-cell sequencing technology has also made great progress. Encouraging new discoveries have been made in stem cell research, including pluripotent stem cells, tissue-specific stem cells and cancer stem cells. In this review, we discuss the latest progress and future prospects of single-cell sequencing technology in the field of stem cells.
引用
收藏
页码:576 / 584
页数:9
相关论文
共 44 条
[1]   Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology [J].
Bardy, C. ;
van den Hurk, M. ;
Kakaradov, B. ;
Erwin, J. A. ;
Jaeger, B. N. ;
Hernandez, R. V. ;
Eames, T. ;
Paucar, A. A. ;
Gorris, M. ;
Marchand, C. ;
Jappelli, R. ;
Barron, J. ;
Bryant, A. K. ;
Kellogg, M. ;
Lasken, R. S. ;
Rutten, B. P. F. ;
Steinbusch, H. W. M. ;
Yeo, G. W. ;
Gage, F. H. .
MOLECULAR PSYCHIATRY, 2016, 21 (11) :1573-1588
[2]   Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing [J].
Blase, Fernando H. ;
Cao, Xiaoyi ;
Zhong, Sheng .
GENOME RESEARCH, 2014, 24 (11) :1787-1796
[3]   Single cell dissection of early kidney development: multilineage priming [J].
Brunskill, Eric W. ;
Park, Joo-Seop ;
Chung, Eunah ;
Chen, Feng ;
Magella, Bliss ;
Potter, S. Steven .
DEVELOPMENT, 2014, 141 (15) :3093-3101
[4]   Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells [J].
Buettner, Florian ;
Natarajan, Kedar N. ;
Casale, F. Paolo ;
Proserpio, Valentina ;
Scialdone, Antonio ;
Theis, Fabian J. ;
Teichmann, Sarah A. ;
Marioni, John C. ;
Stegie, Oliver .
NATURE BIOTECHNOLOGY, 2015, 33 (02) :155-160
[5]   Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq [J].
Cadwell, Cathryn R. ;
Palasantza, Athanasia ;
Jiang, Xiaolong ;
Berens, Philipp ;
Deng, Qiaolin ;
Yilmaz, Marlene ;
Reimer, Jacob ;
Shen, Shan ;
Bethge, Matthias ;
Tolias, Kimberley F. ;
Sandberg, Rickard ;
Tolias, Andreas S. .
NATURE BIOTECHNOLOGY, 2016, 34 (02) :199-+
[6]   Human cerebral organoids recapitulate gene expression programs of fetal neocortex development [J].
Camp, J. Gray ;
Badsha, Farhath ;
Florio, Marta ;
Kanton, Sabina ;
Gerber, Tobias ;
Wilsch-Braeuninger, Michaela ;
Lewitus, Eric ;
Sykes, Alex ;
Hevers, Wulf ;
Lancaster, Madeline ;
Knoblich, Juergen A. ;
Lachmann, Robert ;
Paeaebo, Svante ;
Huttner, Wieland B. ;
Treutlein, Barbara .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (51) :15672-15677
[7]  
Conrad S., 2017, STEM CELLS BIOL ENG, P77
[8]   Single cell RNA sequencing of stem cell-derived retinal ganglion cells [J].
Daniszewski, Maciej Brisbane ;
Senabouth, Anne ;
Nguyen, Quan H. ;
Crombie, Duncan E. ;
Lukowski, Samuel W. ;
Kulkarni, Tejal ;
Sluch, Valentin M. ;
Jabbari, Jafar S. ;
Chamling, Xitiz ;
Zack, Donald J. ;
Pebay, Alice ;
Powell, Joseph E. ;
Hewitt, Alex W. .
SCIENTIFIC DATA, 2018, 5
[9]   Alveolar progenitor and stem cells in lung development, renewal and cancer [J].
Desai, Tushar J. ;
Brownfield, Douglas G. ;
Krasnow, Mark A. .
NATURE, 2014, 507 (7491) :190-+
[10]   Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes [J].
Fuzik, Janos ;
Zeisel, Amit ;
Mate, Zoltan ;
Calvigioni, Daniela ;
Yanagawa, Yuchio ;
Szabo, Gabor ;
Linnarsson, Sten ;
Harkany, Tibor .
NATURE BIOTECHNOLOGY, 2016, 34 (02) :175-+