Molecular dynamics simulation of glycine zwitterion in aqueous solution

被引:60
作者
Campo, Mario G. [1 ]
机构
[1] Univ Nacl La Pampa, Dept Fis, Fac Ciencias Exactas & Nat, RA-6300 Santa Rosa, Argentina
关键词
MONTE-CARLO-SIMULATION; GAMMA-AMINOBUTYRIC-ACID; DIELECTRIC-RELAXATION; CONFORMATIONAL STATE; COMPUTER-SIMULATION; CRYSTAL-STRUCTURE; BETA-ALANINE; AMINO-ACIDS; WATER; SOLVENT;
D O I
10.1063/1.2352756
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A classical molecular dynamics method was used to study the modifications of the solution structure and the properties of glycine zwitterion in aqueous solution due to the increase of glycine zwitterion concentration and the incorporation of Na+ and Cl- ions to the solution. The glycine zwitterion had fundamentally a hydrophilic behavior at infinite dilution, establishing around six hydrogen bonds with the water molecules that surrounded it, which formed a strong hydration layer. Because of the increase of glycine zwitterion concentration, the hydration structure became more compact and the quantity of water molecules bound to this molecule decreased. The Na+ ion bound to the CO2 group of glycine, while the Cl- ion bound mainly to the NH3 group of this molecule. The integration of the ions to the hydration layer of the glycine zwitterion produced modifications in the orientational correlation between atoms of glycine zwitterion and water that surrounded them and an increase of the approaches between the glycine zwitterion molecules. The incorporation of ions to the solution also produced changes in the water-water orientational correlation. Decreases of the water-water hydrogen bonds and diffusion coefficient of all molecules were observed when the glycine zwitterion concentration increased and when the ions were incorporated to the solution. (c) 2006 American Institute of Physics.
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页数:8
相关论文
共 54 条
[31]   PRECISION NEUTRON-DIFFRACTION STRUCTURE DETERMINATION OF PROTEIN AND NUCLEIC-ACID COMPONENTS .3. CRYSTAL AND MOLECULAR STRUCTURE OF AMINO-ACID ALPHA-GLYCINE [J].
JONSSON, PG ;
KVICK, A .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL CRYSTALLOGRAPHY AND CRYSTAL CHEMISTRY, 1972, B 28 (06) :1827-&
[32]  
JUNK G, 1963, J AM CHEM SOC, V85, P839
[33]   HYDRATION STRUCTURE OF GLYCINE MOLECULES IN CONCENTRATED AQUEOUS-SOLUTIONS [J].
KAMEDA, Y ;
EBATA, H ;
USUKI, T ;
UEMURA, O ;
MISAWA, M .
BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN, 1994, 67 (12) :3159-3164
[34]   Ab initio molecular dynamics study of glycine intramolecular proton transfer in water -: art. no. 184506 [J].
Leung, K ;
Rempe, SB .
JOURNAL OF CHEMICAL PHYSICS, 2005, 122 (18)
[35]   The crystal structure of dl-alanine [J].
Levy, HA ;
Corey, RB .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1941, 63 :2095-2108
[36]   Concentration effects in aqueous NaCl solutions. A molecular dynamics simulation [J].
Lyubartsev, AP ;
Laaksonen, A .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (40) :16410-16418
[37]   Studies on the diffusion coefficients of amino acids in aqueous solutions [J].
Ma, YG ;
Zhu, CY ;
Ma, PS ;
Yu, KT .
JOURNAL OF CHEMICAL AND ENGINEERING DATA, 2005, 50 (04) :1192-1196
[38]  
MEZEI M, 1984, J BIOMOL STRUCT DYN, V2, P1
[39]  
Minyaev RM, 2000, MENDELEEV COMMUN, P43
[40]  
Motoya S, 2003, B CHEM SOC JPN, V76, P2293, DOI [10.1246/bcsj.76.2293, DOI 10.1246/BCSJ.76.2293]