Computational and Functional Characterization of Angiogenin Mutations, and Correlation with Amyotrophic Lateral Sclerosis

被引:13
作者
Padhi, Aditya K. [1 ]
Banerjee, Kamalika [1 ]
Gomes, James [1 ]
Banerjee, Manidipa [1 ]
机构
[1] Indian Inst Technol, Kusuma Sch Biol Sci, New Delhi, India
来源
PLOS ONE | 2014年 / 9卷 / 11期
关键词
MOLECULAR-DYNAMICS; HEXANUCLEOTIDE REPEAT; ALS; VARIANTS; IDENTIFICATION; PREDICTION; PLATFORM; C9ORF72; SYSTEM; REGION;
D O I
10.1371/journal.pone.0111963
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The Angiogenin (ANG) gene is frequently mutated in patients suffering from the neurodegenerative disease -amyotrophic lateral sclerosis (ALS). Most of the ALS-causing mutations in Angiogenin affect either its ribonucleolytic or nuclear translocation activity. Here we report the functional characterization of two previously uncharacterized missense mutations in Angiogenin -D22G and L35P. We predict the nature of loss-of-function(s) in these mutants through our previously established Molecular Dynamics (MD) simulation extended to 100 ns, and show that the predictions are entirely validated through biochemical studies with wild-type and mutated proteins. Based on our studies, we provide a biological explanation for the loss-of-function of D22G-Angiogenin leading to ALS, and suggest that the L35P-Angiogenin mutation would probably cause ALS symptoms in individuals harboring this mutation. Our study thus highlights the strength of MD simulation-based predictions, and suggests that this method can be used for correlating mutations in Angiogenin or other effector proteins with ALS symptoms.
引用
收藏
页数:8
相关论文
共 34 条
  • [1] ALSoD: A user-friendly online bioinformatics tool for amyotrophic lateral sclerosis genetics
    Abel, Olubunmi
    Powell, John F.
    Andersen, Peter M.
    Al-Chalabi, Ammar
    [J]. HUMAN MUTATION, 2012, 33 (09) : 1345 - 1351
  • [2] [Anonymous], F1000RES
  • [3] [Anonymous], AMBER 11
  • [4] MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH
    BERENDSEN, HJC
    POSTMA, JPM
    VANGUNSTEREN, WF
    DINOLA, A
    HAAK, JR
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) : 3684 - 3690
  • [5] SOD1, ANG, TARDBP and FUS mutations in amyotrophic lateral sclerosis: A United States clinical testing lab experience
    Brown, Jeffrey A.
    Min, Jionghong
    Staropoli, John F.
    Collin, Elisa
    Bi, Stephen
    Feng, Xin
    Barone, Rosemary
    Cao, Yi
    O'Malley, Lei
    Xin, Winnie
    Mullen, Thomas E.
    Sims, Katherine B.
    [J]. AMYOTROPHIC LATERAL SCLEROSIS, 2012, 13 (02): : 217 - 222
  • [6] Characterization of human angiogenin variants implicated in amyotrophic lateral sclerosis
    Crabtree, Benedict
    Thiyagarajan, Nethaji
    Prior, Stephen H.
    Wilson, Peter
    Iyer, Shalini
    Ferns, Tyrone
    Shapiro, Robert
    Brew, Keith
    Subramanian, Vasanta
    Acharya, K. Ravi
    [J]. BIOCHEMISTRY, 2007, 46 (42) : 11810 - 11818
  • [7] Expanded GGGGCC Hexanucleotide Repeat in Noncoding Region of C9ORF72 Causes Chromosome 9p-Linked FTD and ALS
    DeJesus-Hernandez, Mariely
    Mackenzie, Ian R.
    Boeve, Bradley F.
    Boxer, Adam L.
    Baker, Matt
    Rutherford, Nicola J.
    Nicholson, Alexandra M.
    Finch, NiCole A.
    Flynn, Heather
    Adamson, Jennifer
    Kouri, Naomi
    Wojtas, Aleksandra
    Sengdy, Pheth
    Hsiung, Ging-Yuek R.
    Karydas, Anna
    Seeley, William W.
    Josephs, Keith A.
    Coppola, Giovanni
    Geschwind, Daniel H.
    Wszolek, Zbigniew K.
    Feldman, Howard
    Knopman, David S.
    Petersen, Ronald C.
    Miller, Bruce L.
    Dickson, Dennis W.
    Boylan, Kevin B.
    Graff-Radford, Neill R.
    Rademakers, Rosa
    [J]. NEURON, 2011, 72 (02) : 245 - 256
  • [8] A homology/ab initio hybrid algorithm for sampling near-native protein conformations
    Dhingra, Priyanka
    Jayaram, Bhyravabhotla
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2013, 34 (22) : 1925 - 1936
  • [9] Molecular pathways of motor neuron injury in amyotrophic lateral sclerosis
    Ferraiuolo, Laura
    Kirby, Janine
    Grierson, Andrew J.
    Sendtner, Michael
    Shaw, Pamela J.
    [J]. NATURE REVIEWS NEUROLOGY, 2011, 7 (11) : 616 - 630
  • [10] A novel candidate region for ALS on chromosome 14q11.2
    Greenway, MJ
    Alexander, MD
    Ennis, S
    Traynor, BJ
    Corr, B
    Frost, E
    Green, A
    Hardiman, O
    [J]. NEUROLOGY, 2004, 63 (10) : 1936 - 1938