Digital quantification using amplified single-molecule detection

被引:163
作者
Jarvius, Jonas
Melin, Jonas
Goransson, Jenny
Stenberg, Johan
Fredriksson, Simon
Gonzalez-Rey, Carlos
Bertilsson, Stefan
Nilsson, Mats [1 ]
机构
[1] Univ Uppsala, Dept Genet & Pathol, Rudbeck Lab, S-75185 Uppsala, Sweden
[2] Univ Uppsala, Angstron Lab, Dept Engn Sci, S-75121 Uppsala, Sweden
[3] Univ Uppsala, BMC, Limnol Dept Ecol & Evolut, S-75123 Uppsala, Sweden
关键词
D O I
10.1038/NMETH916
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We describe a scheme for biomolecule enumeration by converting nanometer-scale specific molecular recognition events mediated by rolling-circle amplification to fluorescent micrometer-sized DNA molecules amenable to discrete optical detection. Our amplified single-molecule detection (SMD) approach preserves the discrete nature of the molecular population, allowing multiplex detection and highly precise quantification of molecules over a dynamic range of seven orders of magnitude. We apply the method for sensitive detection and quantification of the bacterial pathogen Vibrio cholerae.
引用
收藏
页码:725 / 727
页数:3
相关论文
共 15 条
[1]   Homogeneous detection of single rolling circle replication products [J].
Blab, GA ;
Schmidt, T ;
Nilsson, M .
ANALYTICAL CHEMISTRY, 2004, 76 (02) :495-498
[2]   Circle-to-circle amplification for precise and sensitive DNA analysis [J].
Dahl, F ;
Banèr, J ;
Gullberg, M ;
Mendel-Hartvig, M ;
Landegren, U ;
Nilsson, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (13) :4548-4553
[3]   Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations [J].
Dressman, D ;
Yan, H ;
Traverso, G ;
Kinzler, KW ;
Vogelstein, B .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (15) :8817-8822
[4]   ROLLING REPLICATION OF SHORT DNA CIRCLES [J].
FIRE, A ;
XU, SQ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (10) :4641-4645
[5]   Protein detection using proximity-dependent DNA ligation assays [J].
Fredriksson, S ;
Gullberg, M ;
Jarvius, J ;
Olsson, C ;
Pietras, K ;
Gústafsdóttir, SM ;
Östman, A ;
Landegren, U .
NATURE BIOTECHNOLOGY, 2002, 20 (05) :473-477
[6]   In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes [J].
Larsson, C ;
Koch, J ;
Nygren, A ;
Janssen, G ;
Raap, AK ;
Landegren, U ;
Nilsson, M .
NATURE METHODS, 2004, 1 (03) :227-232
[7]   Mutation detection and single-molecule counting using isothermal rolling-circle amplification [J].
Lizardi, PM ;
Huang, XH ;
Zhu, ZR ;
Bray-Ward, P ;
Thomas, DC ;
Ward, DC .
NATURE GENETICS, 1998, 19 (03) :225-232
[8]   Thermoplastic microfluidic platform for single-molecule detection, cell culture, and actuation [J].
Melin, J ;
Johansson, H ;
Söderberg, O ;
Nikolajeff, F ;
Landegren, U ;
Nilsson, M ;
Jarvius, J .
ANALYTICAL CHEMISTRY, 2005, 77 (22) :7122-7130
[9]   Digital genotyping and haplotyping with polymerase colonies [J].
Mitra, RD ;
Butty, VL ;
Shendure, J ;
Williams, BR ;
Housman, DE ;
Church, GM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (10) :5926-5931
[10]   Scoring single-nucleotide polymorphisms at the single-molecule level by counting individual DNA cleavage events on surfaces [J].
Nie, B ;
Shortreed, MR ;
Smith, LM .
ANALYTICAL CHEMISTRY, 2005, 77 (20) :6594-6600