Noise-induced Min phenotypes in E-coli

被引:147
作者
Fange, David
Elf, Johan [1 ]
机构
[1] Uppsala Univ, Biomed Ctr, Dept Cell & Mol Biol, Uppsala, Sweden
[2] Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA USA
关键词
D O I
10.1371/journal.pcbi.0020080
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The spatiotemporal oscillations of the Escherichia coli proteins MinD and MinE direct cell division to the region between the chromosomes. Several quantitative models of the Min system have been suggested before, but no one of them accounts for the behavior of all documented mutant phenotypes. We analyzed the stochastic reaction-diffusion kinetics of the Min proteins for several E. coli mutants and compared the results to the corresponding deterministic mean-field description. We found that wild-type (wt) and filamentous (ftsZ(-)) cells are well characterized by the mean-field model, but that a stochastic model is necessary to account for several of the characteristics of the spherical (rodA(-)) and phospathedylethanolamide-deficient (PE-) phenotypes. For spherical cells, the mean-field model is bistable, and the system can get trapped in a non-oscillatory state. However, when the intrinsic noise is considered, only the experimentally observed oscillatory behavior remains. The stochastic model also reproduces the change in oscillation directions observed in the spherical phenotype and the occasional gliding of the MinD region along the inner membrane. For the PE- mutant, the stochastic model explains the appearance of randomly localized and dense MinD clusters as a nucleation phenomenon, in which the stochastic kinetics at low copy number causes local discharges of the high MinD(ATP) to MinD(ADP) potential. We find that a simple five-reaction model of the Min system can explain all documented Min phenotypes, if stochastic kinetics and three-dimensional diffusion are accounted for. Our results emphasize that local copy number fluctuation may result in phenotypic differences although the total number of molecules of the relevant species is high.
引用
收藏
页码:637 / 648
页数:12
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共 73 条
  • [1] THEORY OF REVERSIBLE DIFFUSION-INFLUENCED REACTIONS
    AGMON, N
    SZABO, A
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1990, 92 (09) : 5270 - 5284
  • [2] Sampling rare switching events in biochemical networks
    Allen, RJ
    Warren, PB
    ten Wolde, PR
    [J]. PHYSICAL REVIEW LETTERS, 2005, 94 (01)
  • [3] Forward flux sampling-type schemes for simulating rare events: Efficiency analysis
    Allen, Rosalind J.
    Frenkel, Daan
    ten Wolde, Pieter Rein
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2006, 124 (19)
  • [4] Ander M., 2004, Systems Biology, V1, P129, DOI 10.1049/sb:20045017
  • [5] Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
    Andrews, SS
    Bray, D
    [J]. PHYSICAL BIOLOGY, 2004, 1 (03) : 137 - 151
  • [6] MICROSCOPIC SIMULATIONS OF CHEMICAL INSTABILITIES
    Baras, F.
    Mansour, M. Malek
    [J]. ADVANCES IN CHEMICAL PHYSICS <D>, 1997, 100 : 393 - 474
  • [7] ON DIFFUSION-CONTROLLED DISSOCIATION
    BERG, OG
    [J]. CHEMICAL PHYSICS, 1978, 31 (01) : 47 - 57
  • [8] Signaling in small subcellular volumes. I. Stochastic and diffusion effects on individual pathways
    Bhalla, US
    [J]. BIOPHYSICAL JOURNAL, 2004, 87 (02) : 733 - 744
  • [9] Signaling in small subcellular volumes. II. Stochastic and diffusion effects on synaptic network properties
    Bhalla, US
    [J]. BIOPHYSICAL JOURNAL, 2004, 87 (02) : 745 - 753
  • [10] Evidence for ectopic neurotransmission at a neuronal synapse
    Coggan, JS
    Bartol, TM
    Esquenazi, E
    Stiles, JR
    Lamont, S
    Martone, ME
    Berg, DK
    Ellisman, MH
    Sejnowski, TJ
    [J]. SCIENCE, 2005, 309 (5733) : 446 - 451