Identification of Phenotypic Variation and Genetic Diversity in Rice (Oryza sativa L.) Mutants

被引:21
作者
Truong Thi Tu Anh [1 ]
Tran Dang Khanh [2 ]
Tran Dang Dat [3 ]
Tran Dang Xuan [1 ]
机构
[1] Hiroshima Univ, Grad Sch Int Dev & Cooperat, 1-5-1 Kagamiyama, Higashihiroshima, Hiroshima 7398529, Japan
[2] Agr Genet Inst, Pham Van Dong St, Hanoi 122300, Vietnam
[3] Khai Xuan Int Co Ltd, Hanoi 122000, Vietnam
来源
AGRICULTURE-BASEL | 2018年 / 8卷 / 02期
关键词
phenotypic variation; genetic diversity; polymorphism information content; mutants; SSR markers; MNU (N-Nitroso-N-methylurea) mutation; MICROSATELLITE MARKERS; POPULATION-STRUCTURE; QUALITY TRAITS; IMPROVEMENT; RESOURCES; LANDRACES; CULTIVARS; GENOMICS; MUTATION; YIELD;
D O I
10.3390/agriculture8020030
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
In this study, phenotypic variation and genetic diversity, important factors to decide germplasm for rice breeding, were evaluated among 15 rice mutants attained from the MNU (N-Nitroso-N-methylurea) mutation. The correlation coefficient values among these phenotypic characteristics were calculated. The results showed that full grain number per plant was the most relevant factor contributing to grain yield per plant, and grain length to width ratio was the key parameter affected to amylose content. Furthermore, the genetic variation among mutants was estimated by Simple Sequence Repeat (SSR) markers related to amylose content trait. Fifty-six polymorphism markers covering across eleven rice chromosomes were recorded with an average of 3.02 alleles per locus. The average value of polymorphism information content was 0.47. By using the unweighted pair group method with arithmetic mean (UPGMA) clustering, four clusters were generated with the genetic similarities ranging from 0.52 to 0.91. The variation among groups was 34%, while the variation among individuals within groups was 66%. Findings of this study provided useful genetic background and phenotypic information of collected rice mutants to breed rice cultivars with improved quality.
引用
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页数:15
相关论文
共 39 条
[21]   Evaluation of genetic diversity in rice subspecies using microsatellite markers [J].
Ni, J ;
Colowit, PM ;
Mackill, DJ .
CROP SCIENCE, 2002, 42 (02) :601-607
[22]   Principle and application of plant mutagenesis in crop improvement: a review [J].
Oladosu, Yusuff ;
Rafii, Mohd Y. ;
Abdullah, Norhani ;
Hussin, Ghazali ;
Ramli, Asfaliza ;
Rahim, Harun A. ;
Miah, Gous ;
Usman, Magaji .
BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT, 2016, 30 (01) :1-16
[23]   Mutation discovery for crop improvement [J].
Parry, Martin A. J. ;
Madgwick, Pippa J. ;
Bayon, Carlos ;
Tearall, Katie ;
Hernandez-Lopez, Antonio ;
Baudo, Marcela ;
Rakszegi, Mariann ;
Hamada, Walid ;
Al-Yassin, Adnan ;
Ouabbou, Hassan ;
Labhilili, Mustapha ;
Phillips, Andrew L. .
JOURNAL OF EXPERIMENTAL BOTANY, 2009, 60 (10) :2817-2825
[24]   GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research [J].
Peakall, R ;
Smouse, PE .
MOLECULAR ECOLOGY NOTES, 2006, 6 (01) :288-295
[25]   Genetic diversity among cultivars, landraces and wild relatives of rice as revealed by microsatellite markers [J].
Ram, Sundaram Ganesh ;
Thiruvengadam, Venkatesan ;
Vinod, Kunnummal Kurungari .
JOURNAL OF APPLIED GENETICS, 2007, 48 (04) :337-345
[26]   Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions [J].
Reig-Valiente, Juan L. ;
Viruel, Juan ;
Sales, Ester ;
Marques, Luis ;
Terol, Javier ;
Gut, Marta ;
Derdak, Sophia ;
Talon, Manuel ;
Domingo, Concha .
RICE, 2016, 9
[27]   Analysis of population structure and genetic diversity of Egyptian and exotic rice (Oryza sativa L.) genotypes [J].
Salem, Khaled F. M. ;
Sallam, Ahmed .
COMPTES RENDUS BIOLOGIES, 2016, 339 (01) :1-9
[28]   Mutation of the plastidial α-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm [J].
Satoh, Hikaru ;
Shibahara, Kensuke ;
Tokunaga, Takashi ;
Nishi, Aiko ;
Tasaki, Mikako ;
Hwang, Seon-Kap ;
Okita, Thomas W. ;
Kaneko, Nanae ;
Fujita, Naoko ;
Yoshida, Mayumi ;
Hosaka, Yuko ;
Sato, Aya ;
Utsumi, Yoshinori ;
Ohdan, Takashi ;
Nakamura, Yasunori .
PLANT CELL, 2008, 20 (07) :1833-1849
[29]   A REVIEW OF THE GENETIC-EFFECTS OF ETHYL METHANESULFONATE [J].
SEGA, GA .
MUTATION RESEARCH, 1984, 134 (2-3) :113-142
[30]   Genetic diversity analysis of Pakistan rice (Oryza sativa) germplasm using multiplexed single nucleotide polymorphism markers [J].
Shah, Shahid Masood ;
Arif, Muhammad ;
Aslam, Kashif ;
Shabir, Ghulam ;
Thomson, Michael J. .
GENETIC RESOURCES AND CROP EVOLUTION, 2016, 63 (07) :1113-1126