Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp nov.

被引：4

作者：

Edouard, Sophie ^{[1
]}

Bibi, Fehmida ^{[2
]}

Dhamodharan, Ramasamy ^{[1
]}

Lagier, Jean-Christophe ^{[1
]}

Azhar, Esam Ibraheen ^{[2
,3
]}

Robert, Catherine ^{[1
]}

Caputo, Aurelia ^{[1
]}

Yasir, Muhammad ^{[2
]}

Jiman-Fatani, Asif Ahmad ^{[4
]}

Alawi, Maha ^{[4
,5
]}

Fournier, Pierre-Edouard ^{[1
]}

Raoult, Didier ^{[1
,2
]}

机构：

[1] Aix Marseille Univ, Inst Hosp Univ Mediterranee Infect, Unite Rech Malad Infect & Trop Emergentes, Fac Med, Marseille, France

[2] King Abdulaziz Univ, King Fahd Med Res Ctr, Special Infect Agents Unit, Jeddah 21413, Saudi Arabia

[3] King Abdulaziz Univ, Fac Appl Med Sci, Med Lab Technol Dept, Jeddah 21413, Saudi Arabia

[4] King Abdulaziz Univ, Fac Med, Dept Med Microbiol & Parasitol, Jeddah 21413, Saudi Arabia

[5] King Abdulaziz Univ, King Abdulaziz Univ Hosp, Infect Control Unit, Jeddah 21413, Saudi Arabia

来源：

STANDARDS IN GENOMIC SCIENCES | 2014年 / 9卷 / 03期

关键词：

Corynebacterium jeddahense; genome; culturomics; taxono-genomics; MASSILIENSIS GEN. NOV; MEMBER; BACTERIA; PROPOSAL; ACTINOBACTERIA; CLASSIFICATION; CULTUROMICS; PATIENT; SYSTEM;

D O I：

10.4056/sigs.5561028

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Corynebacterium jeddahense sp. nov., strain JCB(T), is the type strain of Corynebacterium jeddahense sp. nov., a new species within the genus Corynebacterium. This strain, whose genome is described here, was isolated from fecal flora of a 24-year-old Saudi male suffering from morbid obesity. Corynebacterium jeddahense is a Gram-positive, facultative anaerobic, nonsporulating bacillus. Here, we describe the features of this bacterium, together with the complete genome sequencing and annotation, and compare it to other member of the genus Corynebacterium. The 2,472,125 bp-long genome (1 chromosome but not plasmid) contains 2,359 protein-coding and 53 RNA genes, including 1 rRNA operon.

引用

页码：987 / 1002

页数：19

共 65 条

[1]

[Anonymous], 1980, Med J Aust, V2, P3

[2]

[Anonymous], INT J SYST EVOL MI 2

[3] Corynebacterium aquatimens sp nov., a lipophilic Corynebacterium isolated from blood cultures of a patient with bacteremia [J].

Aravena-Roman, M. ;

Sproeer, C. ;

Siering, C. ;

Inglis, T. ;

Schumann, P. ;

Yassin, A. F. .

SYSTEMATIC AND APPLIED MICROBIOLOGY, 2012, 35 (06) :380-384

[4] Gene Ontology: tool for the unification of biology [J].

Ashburner, M ;

Ball, CA ;

Blake, JA ;

Botstein, D ;

Butler, H ;

Cherry, JM ;

Davis, AP ;

Dolinski, K ;

Dwight, SS ;

Eppig, JT ;

Harris, MA ;

Hill, DP ;

Issel-Tarver, L ;

Kasarskis, A ;

Lewis, S ;

Matese, JC ;

Richardson, JE ;

Ringwald, M ;

Rubin, GM ;

Sherlock, G .

NATURE GENETICS, 2000, 25 (01) :25-29

[5] Improved prediction of signal peptides: SignalP 3.0 [J].

Bendtsen, JD ;

Nielsen, H ;

von Heijne, G ;

Brunak, S .

JOURNAL OF MOLECULAR BIOLOGY, 2004, 340 (04) :783-795

[6]

Benson DA, 2013, NUCLEIC ACIDS RES, V41, pD36, DOI [10.1093/nar/gkn723, 10.1093/nar/gkp1024, 10.1093/nar/gkw1070, 10.1093/nar/gkr1202, 10.1093/nar/gkx1094, 10.1093/nar/gkl986, 10.1093/nar/gkq1079, 10.1093/nar/gks1195, 10.1093/nar/gkg057]

[7] The Genus Corynebacterium and Other Medically Relevant Coryneform-Like Bacteria [J].

Bernard, Kathryn .

JOURNAL OF CLINICAL MICROBIOLOGY, 2012, 50 (10) :3152-3158

[8] Assignment of Brevibacterium stationis (ZoBell and Upham 1944) Breed 1953 to the genus Corynebacterium, as Corynebacterium stationis comb. nov., and emended description of the genus Corynebacterium to include isolates that can alkalinize citrate [J].

Bernard, Kathryn A. ;

Wiebe, Deborah ;

Burdz, Tamara ;

Reimer, Aleisha ;

Ng, Betty ;

Singh, Cathleen ;

Schindle, Samantha ;

Pacheco, Ana Luisa .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 :874-879

[9] Studies in the nomenclature and classification of the bacteria II the primary subdivisions of the schizomycetes [J].

Buchanan, RE .

JOURNAL OF BACTERIOLOGY, 1917, 2 (02) :155-164

[10] DNAPlotter: circular and linear interactive genome visualization [J].

Carver, Tim ;

Thomson, Nick ;

Bleasby, Alan ;

Berriman, Matthew ;

Parkhill, Julian .

BIOINFORMATICS, 2009, 25 (01) :119-120

← 1 2 3 4 5 6 7 →