Long non-coding and coding RNA profiling using strand-specific RNA-seq in human hypertrophic cardiomyopathy

被引:46
|
作者
Liu, Xuanyu [1 ,2 ]
Ma, Yi [1 ,2 ]
Yin, Kunlun [1 ,2 ]
Li, Wenke [1 ,2 ]
Chen, Wen [1 ,2 ]
Zhang, Yujing [1 ,2 ]
Zhu, Changsheng [2 ,3 ]
Li, Tianjiao [1 ,2 ]
Han, Bianmei [1 ,2 ]
Liu, Xuewen [1 ,2 ]
Wang, Shuiyun [2 ,3 ]
Zhou, Zhou [1 ,2 ]
机构
[1] Chinese Acad Med Sci, Natl Ctr Cardiovasc Dis, Beijing Key Lab Mol Diagnost Cardiovasc Dis, Ctr Lab Med,Fuwai Hosp,State Key Lab Cardiovasc D, Beijing 100037, Peoples R China
[2] Peking Union Med Coll, Beijing 100037, Peoples R China
[3] Chinese Acad Med Sci, Natl Ctr Cardiovasc Dis, State Key Lab Cardiovasc Dis, Dept Cardiovasc Surg,Fuwai Hosp, Beijing 100037, Peoples R China
基金
中国国家自然科学基金;
关键词
TRANSCRIPTOME;
D O I
10.1038/s41597-019-0094-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Hypertrophic cardiomyopathy (HCM) represents one of the most common heritable heart diseases. However, the signalling pathways and regulatory networks underlying the pathogenesis of HCM remain largely unknown. Here, we present a strand-specific RNA-seq dataset for both coding and lncRNA profiling in myocardial tissues from 28 HCM patients and 9 healthy donors. This dataset constitutes a valuable resource for the community to examine the dysregulated coding and lncRNA genes in HCM versus normal conditions.
引用
收藏
页数:7
相关论文
共 50 条
  • [1] Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA
    Broadbent, Kate M.
    Broadbent, Jill C.
    Ribacke, Ulf
    Wirth, Dyann
    Rinn, John L.
    Sabeti, Pardis C.
    BMC GENOMICS, 2015, 16
  • [2] Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA
    Kate M Broadbent
    Jill C Broadbent
    Ulf Ribacke
    Dyann Wirth
    John L Rinn
    Pardis C Sabeti
    BMC Genomics, 16
  • [3] Strand-Specific RNA-Seq Provides Greater Resolution of Transcriptome Profiling
    Mills, James Dominic
    Kawahara, Yoshihiro
    Janitz, Michael
    CURRENT GENOMICS, 2013, 14 (03) : 173 - 181
  • [4] Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta
    Majewska, Marta
    Lipka, Aleksandra
    Paukszto, Lukasz
    Jastrzebski, Jan Pawel
    Gowkielewicz, Marek
    Jozwik, Marcin
    Majewski, Mariusz Krzysztof
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 19 (07)
  • [5] RNA-seq profiling of mRNA associated with hypertrophic cardiomyopathy
    Ren, Chang-Wei
    Liu, Jia-Ji
    Li, Jin-Hua
    Li, Jing-Wei
    Dai, Jiang
    Lai, Yong-Qiang
    MOLECULAR MEDICINE REPORTS, 2016, 14 (06) : 5573 - 5586
  • [6] Identification of cardiac long non-coding RNA profile in human dilated cardiomyopathy
    Li, Huaping
    Chen, Chen
    Fan, Jiahui
    Yin, Zhongwei
    Ni, Li
    Cianflone, Katherine
    Wang, Yan
    Wang, Dao Wen
    CARDIOVASCULAR RESEARCH, 2018, 114 (05) : 747 - 758
  • [7] The Novel Landscape of Long Non-Coding RNAs in Response to Human Foamy Virus Infection Characterized by RNA-Seq
    Xu, Shanshan
    Dong, Lanlan
    Shi, Yingying
    Chen, Liujun
    Yuan, Peipei
    Wang, Shuang
    Li, Zhi
    Sun, Yan
    Han, Song
    Yin, Jun
    Peng, Biwen
    He, Xiaohua
    Liu, Wanhong
    AIDS RESEARCH AND HUMAN RETROVIRUSES, 2017, 33 (05) : 452 - +
  • [8] The long non-coding RNA expression profile of Coxsackievirus A16 infected RD cells identified by RNA-seq
    Shi, Yingying
    Tu, Huilin
    Chen, Xiong
    Zhang, Yingying
    Chen, Liujun
    Liu, Zhongchun
    Sheng, Jiqun
    Han, Song
    Yin, Jun
    Peng, Biwen
    He, Xiaohua
    Liu, Wanhong
    VIROLOGICA SINICA, 2016, 31 (02) : 131 - 141
  • [9] Identification of Long Non-Coding RNAs Associated with Tomato Fruit Expansion and Ripening by Strand-Specific Paired-End RNA Sequencing
    Wang, Jinyu
    Feng, Yan
    Ding, Xiaotao
    Huo, Jingtian
    Nie, Wen-Feng
    HORTICULTURAE, 2021, 7 (12)
  • [10] Comprehensive Analysis of Alternative Splicing in Digitalis purpurea by Strand-Specific RNA-Seq
    Wu, Bin
    Suo, Fengmei
    Lei, Wanjun
    Gu, Lianfeng
    PLOS ONE, 2014, 9 (08):