Characterization and similarity analysis of DNA sequences based on mutually direct-complementary triplets

被引:11
作者
Wang, Jun
Zhang, Yi
机构
[1] Dalian Univ Technol, Dept Math Appl, Dalian 116024, Peoples R China
[2] Dalian Univ Technol, Coll Adv Sci & Technol, Dalian 116024, Peoples R China
基金
中国国家自然科学基金;
关键词
2-D GRAPHICAL REPRESENTATION; NUMERICAL CHARACTERIZATION; GENOMIC SEQUENCES; GENETIC-CODE; H-CURVES;
D O I
10.1016/j.cplett.2006.05.047
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The asymmetry in word use in coding sequences written in DNA language, motivates a quantification of the differences in the use of mutually direct-complementary triplets, by which, we characterize DNA sequences and compare the coding sequences of exon 1 of beta-globin gene of 11 different species. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码:324 / 328
页数:5
相关论文
共 32 条
[1]   OVER-REPRESENTATION AND UNDER-REPRESENTATION OF SHORT OLIGONUCLEOTIDES IN DNA-SEQUENCES [J].
BURGE, C ;
CAMPBELL, AM ;
KARLIN, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (04) :1358-1362
[2]   A SIMPLE WAY TO LOOK AT DNA [J].
GATES, MA .
JOURNAL OF THEORETICAL BIOLOGY, 1986, 119 (03) :319-328
[3]   Numerical characterization of DNA sequences in a 2-D graphical representation scheme of low degeneracy [J].
Guo, XF ;
Nandy, A .
CHEMICAL PHYSICS LETTERS, 2003, 369 (3-4) :361-366
[4]  
GUO XF, 2001, CHEM PHYS LETT, V106, P350
[5]   DINUCLEOTIDES AND G+C CONTENT IN HUMAN GENES - OPPOSITE BEHAVIOR OF GPG, GPC, AND TPC AT II-III CODON POSITIONS AND IN INTRONS [J].
GUTIERREZ, G ;
OLIVER, JL ;
MARIN, A .
JOURNAL OF MOLECULAR EVOLUTION, 1993, 37 (02) :131-136
[6]  
HAMORI E, 1989, BIOTECHNIQUES, V7, P710
[7]  
HAMORI E, 1983, J BIOL CHEM, V258, P1318
[8]  
He P., 2002, Internet Electronic Journal of Molecular Design, V1, P668
[9]   Characteristic sequences for DNA primary sequence [J].
He, PA ;
Wang, J .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2002, 42 (05) :1080-1085
[10]   HETEROGENEITY OF GENOMES - MEASURES AND VALUES [J].
KARLIN, S ;
LADUNGA, I ;
BLAISDELL, BE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (26) :12837-12841