Receptor mimicry by antibody F045-092 facilitates universal binding to the H3 subtype of influenza virus

被引:165
作者
Lee, Peter S. [1 ,2 ]
Ohshima, Nobuko [3 ]
Stanfield, Robyn L. [1 ]
Yu, Wenli [1 ]
Iba, Yoshitaka [3 ]
Okuno, Yoshinobu [4 ]
Kurosawa, Yoshikazu [3 ]
Wilson, Ian A. [1 ,2 ]
机构
[1] Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
[2] Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
[3] Fujita Hlth Univ, Inst Comprehens Med Sci, Div Antibody Project, Toyoake, Aichi 4701192, Japan
[4] Osaka Univ, Kanonji Inst, Res Fdn Microbial Dis, Kanonji, Kagawa 7680061, Japan
基金
美国国家卫生研究院;
关键词
SINGLE-DOMAIN ANTIBODIES; STRUCTURAL BASIS; HEMAGGLUTININ; RECOGNITION; HIV-1; AFFINITY; SITE; PH; NEUTRALIZATION; GLYCOPROTEIN;
D O I
10.1038/ncomms4614
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Influenza viruses present a significant health challenge each year, as in the H3N2 epidemic of 2012-2013. Here we describe an antibody, F045-092, that possesses broadly neutralizing activity against the entire H3 subtype and accommodates the natural variation and additional glycosylation in all strains tested from 1963 to 2011. Crystal structures of F045-092 in complex with HAs from 1975 and 2011 H3N2 viruses reveal the structural basis for its neutralization breadth through insertion of its 23-residue HCDR3 into the receptor-binding site that involves striking receptor mimicry. F045-092 extends its recognition to divergent subtypes, including H1, H2 and H13, using the enhanced avidity of its IgG to overcome lower-affinity Fab binding, as observed with other antibodies that target the receptor-binding site. This unprecedented level of antibody cross-reactivity against the H3 subtype can potentially inform on development of a pan-H3 vaccine or small-molecule therapeutics.
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页数:9
相关论文
共 64 条
[1]   Effect of the addition of oligosaccharides on the biological activities and antigenicity of influenza A/H3N2 virus hemagglutinin [J].
Abe, Y ;
Takashita, E ;
Sugawara, K ;
Matsuzaki, Y ;
Muraki, Y ;
Hongo, S .
JOURNAL OF VIROLOGY, 2004, 78 (18) :9605-9611
[2]   Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains [J].
Abhinandan, K. R. ;
Martin, Andrew C. R. .
MOLECULAR IMMUNOLOGY, 2008, 45 (14) :3832-3839
[3]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[4]   Characterization of a high-affinity human antibody with a disulfide bridge in the third complementarity-determining region of the heavy chain [J].
Almagro, Juan Carlos ;
Raghunathan, Gopalan ;
Beil, Eric ;
Janecki, Dariusz J. ;
Chen, Qiang ;
Dinh, Thai ;
LaCombe, Ann ;
Connor, Judy ;
Ware, Mark ;
Kim, Paul H. ;
Swanson, Ronald V. ;
Fransson, Johan .
JOURNAL OF MOLECULAR RECOGNITION, 2012, 25 (03) :125-135
[5]   The influenza virus resource at the national center for biotechnology information [J].
Bao, Yiming ;
Bolotov, Pavel ;
Dernovoy, Dmitry ;
Kiryutin, Boris ;
Zaslavsky, Leonid ;
Tatusova, Tatiana ;
Ostell, Jim ;
Lipman, David .
JOURNAL OF VIROLOGY, 2008, 82 (02) :596-601
[6]   An antibody that prevents the hemagglutinin low pH fusogenic transition [J].
Barbey-Martin, C ;
Gigant, B ;
Bizebard, T ;
Calder, LJ ;
Wharton, SA ;
Skehel, JJ ;
Knossow, M .
VIROLOGY, 2002, 294 (01) :70-74
[7]   STRUCTURE OF INFLUENZA-VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY [J].
BIZEBARD, T ;
GIGANT, B ;
RIGOLET, P ;
RASMUSSEN, B ;
DIAT, O ;
BOSECKE, P ;
WHARTON, SA ;
SKEHEL, JJ ;
KNOSSOW, M .
NATURE, 1995, 376 (6535) :92-94
[8]  
Blanton L, 2013, MMWR-MORBID MORTAL W, V62, P124
[9]   STRUCTURE OF INFLUENZA HEMAGGLUTININ AT THE PH OF MEMBRANE-FUSION [J].
BULLOUGH, PA ;
HUGHSON, FM ;
SKEHEL, JJ ;
WILEY, DC .
NATURE, 1994, 371 (6492) :37-43
[10]   MolProbity: all-atom structure validation for macromolecular crystallography [J].
Chen, Vincent B. ;
Arendall, W. Bryan, III ;
Headd, Jeffrey J. ;
Keedy, Daniel A. ;
Immormino, Robert M. ;
Kapral, Gary J. ;
Murray, Laura W. ;
Richardson, Jane S. ;
Richardson, David C. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :12-21