Chaetomium thermophilum formate dehydrogenase has high activity in the reduction of hydrogen carbonate (HCO3-) to formate

被引:38
作者
Aslan, Askin Sevinc [1 ]
Valjakka, Jarkko [2 ]
Ruupunen, Jouni [2 ]
Yildirim, Deniz [3 ]
Turner, Nicholas J. [4 ]
Turunen, Ossi [5 ]
Binay, Baris [6 ]
机构
[1] Gebze Tech Univ, Dept Chem, TR-41400 Gebze, Kocaeli, Turkey
[2] Univ Tampere, BioMediTech, Tampere, Finland
[3] Cukurova Univ, Vocat Sch Ceyhan, Adana, Turkey
[4] Univ Manchester, Manchester Inst Biotechnol, Sch Chem, 131 Princess St, Manchester M1 7DN, Lancs, England
[5] Aalto Univ, Sch Chem Technol, Dept Biotechnol & Chem Technol, FI-00076 Aalto, Finland
[6] Gebze Tech Univ, Dept Bioengn, TR-41400 Gebze, Kocaeli, Turkey
关键词
biotransformation of CO2; catalytic mechanism; kinetic parameters with hydrogen carbonate; molecular modeling; NAD(+)-dependent formate dehydrogenase; NAD(+)-DEPENDENT FORMATE; CATALYTIC MECHANISM; FORMIC-ACID; CONVERSION; DIOXIDE; CO2; BIOCATALYSTS;
D O I
10.1093/protein/gzw062
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
While formate dehydrogenases (FDHs) have been used for cofactor recycling in chemoenzymatic synthesis, the ability of FDH to reduce CO2 could also be utilized in the conversion of CO2 to useful products via formate (HCOO-). In this study, we investigated the reduction of CO2 in the form of hydrogen carbonate (HCO3-) to formate by FDHs from Candida methylica (CmFDH) and Chaetomium thermophilum (CtFDH) in a NADH-dependent reaction. The catalytic performance with HCO(3)w(-) as a substrate was evaluated by measuring the kinetic rates and conducting productivity assays. CtFDH showed a higher efficiency in converting HCO3- to formate than CmFDH, whereas CmFDH was better in the oxidation of formate. The pH optimum of the reduction was at pH 7-8. However, the high concentrations of HCO3- reduced the reaction rate. CtFDH was modeled in the presence of HCO3- showing that it fits to the active site. The active site setting for hydride transfer in CO2 reduction was modeled. The hydride donated by NADH would form a favorable contact to the carbon atom of HCO3-, resulting in a surplus of electrons within the molecule. This would cause the complex formed by hydrogen carbonate and the hydride to break into formate and hydroxide ions.
引用
收藏
页码:47 / 55
页数:9
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共 22 条
  • [1] Formate production through biocatalysis
    Alissandratos, Apostolos
    Kim, Hye-Kyung
    Easton, Christopher J.
    [J]. BIOENGINEERED, 2013, 4 (05) : 348 - 350
  • [2] Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde
    Atsumi, Shota
    Higashide, Wendy
    Liao, James C.
    [J]. NATURE BIOTECHNOLOGY, 2009, 27 (12) : 1177 - U142
  • [3] Reversible lnterconversion of CO2 and Formate by a Molybdenum-Containing Formate Dehydrogenase
    Bassegoda, Arnau
    Madden, Christopher
    Wakerley, David W.
    Reisner, Erwin
    Hirst, Judy
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2014, 136 (44) : 15473 - 15476
  • [4] Nanoscale design to enable the revolution in renewable energy
    Baxter, Jason
    Bian, Zhixi
    Chen, Gang
    Danielson, David
    Dresselhaus, Mildred S.
    Fedorov, Andrei G.
    Fisher, Timothy S.
    Jones, Christopher W.
    Maginn, Edward
    Kortshagen, Uwe
    Manthiram, Arumugam
    Nozik, Arthur
    Rolison, Debra R.
    Sands, Timothy
    Shi, Li
    Sholl, David
    Wu, Yiying
    [J]. ENERGY & ENVIRONMENTAL SCIENCE, 2009, 2 (06) : 559 - 588
  • [5] Highly stable and reusable immobilized formate dehydrogenases: Promising biocatalysts for in situ regeneration of NADH
    Binay, Baris
    Alagoz, Dilek
    Yildirim, Deniz
    Celik, Ayhan
    Tukel, S. Seyhan
    [J]. BEILSTEIN JOURNAL OF ORGANIC CHEMISTRY, 2016, 12 : 271 - 277
  • [6] Renewable fuels from concentrated solar power: towards practical artificial photosynthesis
    Bonke, Shannon A.
    Wiechen, Mathias
    MacFarlane, Douglas R.
    Spiccia, Leone
    [J]. ENERGY & ENVIRONMENTAL SCIENCE, 2015, 8 (09) : 2791 - 2796
  • [7] A theoretical study of the catalytic mechanism of formate dehydrogenase
    Castillo, R.
    Oliva, M.
    Marti, S.
    Moliner, V.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (32) : 10012 - 10022
  • [8] Efficient CO2-Reducing Activity of NAD-Dependent Formate Dehydrogenase from Thiobacillus sp KNK65MA for Formate Production from CO2 Gas
    Choe, Hyunjun
    Joo, Jeong Chan
    Cho, Dae Haeng
    Kim, Min Hoo
    Lee, Sang Hyun
    Jung, Kwang Deog
    Kim, Yong Hwan
    [J]. PLOS ONE, 2014, 9 (07):
  • [9] The oxygen-tolerant and NAD+-dependent formate dehydrogenase from Rhodobacter capsulatus is able to catalyze the reduction of CO2 to formate
    Hartmann, Tobias
    Leimkuehler, Silke
    [J]. FEBS JOURNAL, 2013, 280 (23) : 6083 - 6096
  • [10] Conversion of CO2 to formate in an electroenzymatic cell using Candida boidinii formate dehydrogenase
    Kim, Sungrye
    Kim, Min Koo
    Lee, Sang Hyun
    Yoon, Sungho
    Jung, Kwang-Deog
    [J]. JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC, 2014, 102 : 9 - 15