Genetic characterisation of influenza C viruses detected in Singapore in 2006

被引:5
作者
Ting, Pei-jun [1 ]
Seah, Shirley Gek-Kheng [1 ]
Lim, Elizabeth Ai-Sim [1 ]
Liaw, Jasper Chin-Wen [1 ]
Boon-Huan, Tan [1 ]
机构
[1] DSO Natl Labs, DMERI, 13-00 27 Med Dr, Singapore 117510, Singapore
关键词
Febrile respiratory illness; influenza C virus; phylogenetic analysis; Singapore military recruits; INFECTION; REASSORTMENT; JAPAN;
D O I
10.1111/irv.12352
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
In an earlier study on respiratory infections in Singapore military recruits, four influenza C virus (FLUCV) infections were detected out of the 1354 samples collected. All four isolates were detected in 2006, and their whole genome was completely sequenced and analysed. Phylogenetic analysis of the hemagglutinin esterase fusion (HEF) gene revealed that all four Singapore isolates belonged to the C/Japan-Kanagawa/1/76-related lineage. However, the genes of the four FLUCV isolates had origins from several different lineages, and the genome composition resembles that of the C/Japan-Miyagi/9/96-like strains that had been circulating in Japan between 1996 and 2000.
引用
收藏
页码:27 / 33
页数:7
相关论文
共 14 条
[1]   Phylogenetic analysis of influenza C virus nonstructural (NS) protein genes and identification of the NS2 protein [J].
Alamgir, ASM ;
Matsuzaki, Y ;
Hongo, S ;
Tsuchiya, E ;
Sugawara, K ;
Muraki, Y ;
Nakamura, K .
JOURNAL OF GENERAL VIROLOGY, 2000, 81 :1933-1940
[2]   Comparative analysis of the ability of the polymerase complexes of influenza viruses type A, B and C to assemble into functional RNPs that allow expression and replication of heterotypic model RNA templates in vivo [J].
Crescenzo-Chaigne, B ;
Naffakh, N ;
van der Werf, S .
VIROLOGY, 1999, 265 (02) :342-353
[3]   Study of influenza C virus infection in France [J].
Gouarin, S. ;
Vabret, A. ;
Dina, J. ;
Petitjean, J. ;
Brouard, J. ;
Cuvillon-Nimal, D. ;
Freymuth, F. .
JOURNAL OF MEDICAL VIROLOGY, 2008, 80 (08) :1441-1446
[4]   Universal primer set for the full-length amplification of all influenza A viruses [J].
Hoffmann, E ;
Stech, J ;
Guan, Y ;
Webster, RG ;
Perez, DR .
ARCHIVES OF VIROLOGY, 2001, 146 (12) :2275-2289
[5]   Influenza C virus infection in military recruits-symptoms and clinical manifestation [J].
Kauppila, Jaana ;
Ronkko, Esa ;
Juvonen, Raija ;
Saukkoriipi, Annika ;
Saikku, Pekka ;
Bloigu, Aini ;
Vainio, Olli ;
Ziegler, Thedi .
JOURNAL OF MEDICAL VIROLOGY, 2014, 86 (05) :879-885
[6]   Interspecies transmission of influenza C virus between humans and pigs [J].
Kimura, H ;
Abiko, C ;
Peng, G ;
Muraki, Y ;
Sugawara, K ;
Hongo, S ;
Kitame, F ;
Mizuta, K ;
Numazaki, Y ;
Suzuki, H ;
Nakamura, K .
VIRUS RESEARCH, 1997, 48 (01) :71-79
[7]  
Liu PY, 2009, J MICROBIOL IMMUNOL, V42, P114
[8]   Frequent reassortment among influenza C viruses [J].
Matsuzaki, Y ;
Mizuta, K ;
Sugawara, K ;
Tsuchiya, E ;
Muraki, Y ;
Hongo, S ;
Suzuki, H ;
Nishimura, H .
JOURNAL OF VIROLOGY, 2003, 77 (02) :871-881
[9]   Antigenic and genetic characterization of influenza C viruses which caused two outbreaks in Yamagata City, Japan, in 1996 and 1998 [J].
Matsuzaki, Y ;
Sugawara, K ;
Mizuta, K ;
Tsuchiya, E ;
Muraki, Y ;
Hongo, S ;
Suzuki, H ;
Nakamura, K .
JOURNAL OF CLINICAL MICROBIOLOGY, 2002, 40 (02) :422-429
[10]   A nationwide epidemic of influenza C virus infection in Japan in 2004 [J].
Matsuzaki, Yoko ;
Abiko, Chieko ;
Mizuta, Katsumi ;
Sugawara, Kanetsu ;
Takashita, Emi ;
Muraki, Yasushi ;
Suzuki, Hiroshi ;
Mikawa, Masahide ;
Shimada, Shinichi ;
Sato, Katsuhiko ;
Kuzuya, Mitsutaka ;
Takao, Shinichi ;
Wakatsuki, Kiyoko ;
Itagaki, Tsutomu ;
Hongo, Seiji ;
Nishimura, Hidekazu .
JOURNAL OF CLINICAL MICROBIOLOGY, 2007, 45 (03) :783-788