Current trends in high throughput proteomics in cyanobacteria

被引:20
作者
Ow, Saw Yen [1 ]
Wright, Phillip C. [1 ]
机构
[1] Univ Sheffield, Dept Chem & Proc Engn, ChELSI, Biol & Environm Syst Grp, Sheffield S1 3JD, S Yorkshire, England
基金
英国工程与自然科学研究理事会;
关键词
Shotgun proteomics; High throughput proteomics; Cyanobacteria proteomics; Cyanobacteria; Post-genomic study; MULTIPLEXED ABSOLUTE QUANTIFICATION; QUANTITATIVE MASS-SPECTROMETRY; COMPLEX PROTEIN MIXTURES; SYSTEMS BIOLOGY; SHOTGUN PROTEOMICS; 2-DIMENSIONAL ELECTROPHORESIS; ISOBARIC TAGS; IDENTIFICATION; EXPRESSION; PEPTIDES;
D O I
10.1016/j.febslet.2009.03.062
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Advancements in genome sequencing and high throughput proteomics of cyanobacterial strains led to 13 published reports, from a small number of laboratories. These successful studies focused on Synechocystis, Nostoc and Anabaena strains, prochlorococcus, and halotolerant Euhalothece. The implications of emerging quantitative aspects developed and applied in these large-scale studies are assessed in the wake of advanced cyanobacterial research. Furthermore, contributions from traditional and early high throughput analysis of cyanobacterial proteomics are compared and summarised. Finally, opinions are provided to link both the trends and the future challenges. This review aims to push the synergy between proteomics and cyanobacterial research to improve both the technical and biological significance. (C) 2009 Federation of European Biochemical Societies. Published by Elsevier B. V. All rights reserved.
引用
收藏
页码:1744 / 1752
页数:9
相关论文
共 81 条
[1]  
Aggarwal Kunal, 2006, Briefings in Functional Genomics & Proteomics, V5, P112, DOI 10.1093/bfgp/ell018
[2]   A soluble 3D LC/MS/MS proteome of the filamentous cyanobacterium Nostoc punctiforme [J].
Anderson, D. C. ;
Campbell, Elsie L. ;
Meeks, John C. .
JOURNAL OF PROTEOME RESEARCH, 2006, 5 (11) :3096-3104
[3]   Quantitative mass spectrometry in proteomics: a critical review [J].
Bantscheff, Marcus ;
Schirle, Markus ;
Sweetman, Gavain ;
Rick, Jens ;
Kuster, Bernhard .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2007, 389 (04) :1017-1031
[4]  
Barrios-Llerena Martin E., 2006, Briefings in Functional Genomics & Proteomics, V5, P121, DOI 10.1093/bfgp/ell021
[5]   2-DE proteomic analysis of the model cyanobacterium Anabaena variabilis [J].
Barrios-Llerena, Martin E. ;
Reardon, Kenneth F. ;
Wright, Phillip C. .
ELECTROPHORESIS, 2007, 28 (10) :1624-1632
[6]   Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides [J].
Beynon, RJ ;
Doherty, MK ;
Pratt, JM ;
Gaskell, SJ .
NATURE METHODS, 2005, 2 (08) :587-589
[7]   Cyanobacterial postgenomic research and systems biology [J].
Burja, AM ;
Dhamwichukorn, S ;
Wright, PC .
TRENDS IN BIOTECHNOLOGY, 2003, 21 (11) :504-511
[8]   Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics [J].
Callister, SJ ;
Barry, RC ;
Adkins, JN ;
Johnson, ET ;
Qian, WJ ;
Webb-Robertson, BJM ;
Smith, RD ;
Lipton, MS .
JOURNAL OF PROTEOME RESEARCH, 2006, 5 (02) :277-286
[9]   An introduction to quadrupole-time-of-flight mass spectrometry [J].
Chernushevich, IV ;
Loboda, AV ;
Thomson, BA .
JOURNAL OF MASS SPECTROMETRY, 2001, 36 (08) :849-865
[10]   Isobaric tags for relative and absolute quantitation (iTRAQ) reproducibility: Implication of multiple injections [J].
Chong, PK ;
Gan, CS ;
Pham, TK ;
Wright, PC .
JOURNAL OF PROTEOME RESEARCH, 2006, 5 (05) :1232-1240