Oligonucleotide microarrays in microbial diagnostics

被引:181
作者
Bodrossy, L [1 ]
Sessitsch, A [1 ]
机构
[1] ARC Seibersdorf Res GmbH, Dept Bioresources Microbiol, A-2444 Seibersdorf, Austria
基金
奥地利科学基金会;
关键词
D O I
10.1016/j.mib.2004.04.005
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Oligonucleotide microarrays offer a fast, high-throughput alternative for the parallel detection of microbes from virtually any sample. The application potential spreads across most sectors of life sciences, including environmental microbiology and microbial ecology; human, veterinary, food and plant diagnostics; water quality control; industrial microbiology, and so on. The past two years have witnessed a rapid increase of research in this field. Many alternative techniques were developed and validated as seen in 'proof-of-concept' articles. Publications reporting on the application of oligonucleotide microarray technology for microbial diagnostics in microbiology driven projects have just started to appear. Current and future technical and bioinformatics developments will inevitably improve the potential of this technology further.
引用
收藏
页码:245 / 254
页数:10
相关论文
共 66 条
[1]   The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function [J].
Adamczyk, J ;
Hesselsoe, M ;
Iversen, N ;
Horn, M ;
Lehner, A ;
Nielsen, PH ;
Schloter, M ;
Roslev, P ;
Wagner, M .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (11) :6875-6887
[2]   Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array [J].
Anthony, RM ;
Brown, TJ ;
French, GL .
JOURNAL OF CLINICAL MICROBIOLOGY, 2000, 38 (02) :781-788
[3]   A nested array of rRNA targeted probes for the detection and identification of enterococci by reverse hybridization [J].
Behr, T ;
Koob, C ;
Schedl, M ;
Mehlen, A ;
Meier, H ;
Knopp, D ;
Frahm, E ;
Obst, U ;
Schleifer, KH ;
Niessner, R ;
Ludwig, W .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2000, 23 (04) :563-572
[4]   Development and validation of a diagnostic microbial microarray for methanotrophs [J].
Bodrossy, L ;
Stralis-Pavese, N ;
Murrell, JC ;
Radajewski, S ;
Weilharter, A ;
Sessitsch, A .
ENVIRONMENTAL MICROBIOLOGY, 2003, 5 (07) :566-582
[5]   Radioisotopic, culture-based, and oligonucleotide microchip analyses of thermophilic microbial communities in a continental high-temperature petroleum reservoir [J].
Bonch-Osmolovskaya, EA ;
Miroshnichenko, ML ;
Lebedinsky, AV ;
Chernyh, NA ;
Nazina, TN ;
Ivoilov, VS ;
Belyaev, SS ;
Boulygina, ES ;
Lysov, YP ;
Perov, AN ;
Mirzabekov, AD ;
Hippe, H ;
Stackebrandt, E ;
L'Haridon, S ;
Jeanthon, C .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (10) :6143-6151
[6]   Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction) [J].
Busti, Elena ;
Bordoni, Roberta ;
Castiglioni, Bianca ;
Monciardini, Paolo ;
Sosio, Margherita ;
Donadio, Stefano ;
Consolandi, Clarissa ;
Bernardi, Luigi Rossi ;
Battaglia, Cristina ;
De Bellis, Gianluca .
BMC MICROBIOLOGY, 2002, 2 (1) :1-12
[7]  
CHANDLER DP, 2000, APPL ENVIRON MICROB, V69, P2950
[8]   Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA [J].
Cheung, VG ;
Nelson, SF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (25) :14676-14679
[9]   Detection and genotyping of human group A rotaviruses by oligonucleotide microarray hybridization [J].
Chizhikov, V ;
Wagner, M ;
Ivshina, A ;
Hoshino, Y ;
Kapikian, AZ ;
Chumakov, K .
JOURNAL OF CLINICAL MICROBIOLOGY, 2002, 40 (07) :2398-2407
[10]   Microarray analysis of microbial virulence factors [J].
Chizhikov, V ;
Rasooly, A ;
Chumakov, K ;
Levy, DD .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (07) :3258-3263