Postmortem Diagnostic Exome Sequencing Identifies a De Novo TUBB3 Alteration in a Newborn With Prenatally Diagnosed Hydrocephalus and Suspected Walker Warburg Syndrome

被引:6
作者
Powis, Zoe [1 ]
Chamberlin, Adam C. [1 ]
Alamillo, Christina L. [1 ]
Ceulemans, Sophia [2 ]
Bird, Lynne M. [2 ,3 ]
Tang, Sha [1 ]
机构
[1] Ambry Genet, 15 Argonaut, Aliso Viejo, CA 92656 USA
[2] Rady Childrens Hosp, Div Genet, San Diego, CA USA
[3] Univ Calif San Diego, Dept Pediat, San Diego, CA 92103 USA
关键词
TUBB3; protein; human; exome; clinical diagnostic sequencing; postmortem diagnosis; Walker-Warburg syndrome; abnormal brain; hydrocephalus; MUTATIONS; PREDICTION;
D O I
10.1177/1093526617698611
中图分类号
R36 [病理学];
学科分类号
100104 ;
摘要
Objective: Herein, we report a case of a deceased newborn with prenatally detected hydrocephalus. Postnatal findings included abnormal brain imaging and electroencephalogram, optic nerve abnormalities, and elevated creatine kinase (CK). No underlying genetic etiology had been previously identified for the proband, despite testing with a congenital muscular dystrophy gene panel. Methods: Diagnostic exome sequencing (DES) was performed on the proband-parents trio, and candidate alterations were confirmed using automated fluorescence dideoxy sequencing. Results: Exome sequencing of the proband, mother and father identified a previously unreported apparently de novo heterozygous tubulin, beta-3 (TUBB3) c.523G>C (p.V175L) alteration in the proband. Conclusion: Overall, DES established a likely molecular genetic diagnosis for a postmortem case after traditional testing methods were uninformative. The DES results allowed for reproductive options, such as preimplantation genetic diagnosis and/or prenatal diagnosis, to be available to the parents in future pregnancies.
引用
收藏
页码:319 / 323
页数:5
相关论文
共 15 条
[1]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[2]   A method and server for predicting damaging missense mutations [J].
Adzhubei, Ivan A. ;
Schmidt, Steffen ;
Peshkin, Leonid ;
Ramensky, Vasily E. ;
Gerasimova, Anna ;
Bork, Peer ;
Kondrashov, Alexey S. ;
Sunyaev, Shamil R. .
NATURE METHODS, 2010, 7 (04) :248-249
[3]   BLAST plus : architecture and applications [J].
Camacho, Christiam ;
Coulouris, George ;
Avagyan, Vahram ;
Ma, Ning ;
Papadopoulos, Jason ;
Bealer, Kevin ;
Madden, Thomas L. .
BMC BIOINFORMATICS, 2009, 10
[4]   Computational Predictions of Volatile Anesthetic Interactions with the Microtubule Cytoskeleton: Implications for Side Effects of General Anesthesia [J].
Craddock, Travis J. A. ;
George, Marc St. ;
Freedman, Holly ;
Barakat, Khaled H. ;
Damaraju, Sambasivarao ;
Hameroff, Stuart ;
Tuszynski, Jack A. .
PLOS ONE, 2012, 7 (06)
[5]   Mutations in tubulin genes are frequent causes of various foetal malformations of cortical development including microlissencephaly [J].
Fallet-Bianco, Catherine ;
Laquerriere, Annie ;
Poirier, Karine ;
Razavi, Ferechte ;
Guimiot, Fabien ;
Dias, Patricia ;
Loeuillet, Laurence ;
Lascelles, Karine ;
Beldjord, Cherif ;
Carion, Nathalie ;
Toussaint, Aurelie ;
Revencu, Nicole ;
Addor, Marie-Claude ;
Lhermitte, Benoit ;
Gonzales, Marie ;
Martinovich, Jelena ;
Bessieres, Bettina ;
Marcy-Bonniere, Maryse ;
Jossic, Frederique ;
Marcorelles, Pascale ;
Loget, Philippe ;
Chelly, Jamel ;
Bahi-Buisson, Nadia .
ACTA NEUROPATHOLOGICA COMMUNICATIONS, 2014, 2
[6]   Enhanced utility of family-centered diagnostic exome sequencing with inheritance model-based analysis: results from 500 unselected families with undiagnosed genetic conditions [J].
Farwell, Kelly D. ;
Shahmirzadi, Layla ;
El-Khechen, Dima ;
Powis, Zoee ;
Chao, Elizabeth C. ;
Davis, Brigette Tippin ;
Baxter, Ruth M. ;
Zeng, Wenqi ;
Mroske, Cameron ;
Parra, Melissa C. ;
Gandomi, Stephanie K. ;
Lu, Ira ;
Li, Xiang ;
Lu, Hong ;
Lu, Hsiao-Mei ;
Salvador, David ;
Ruble, David ;
Lao, Monica ;
Fischbach, Soren ;
Wen, Jennifer ;
Lee, Shela ;
Elliott, Aaron ;
Dunlop, Charles L. M. ;
Tang, Sha .
GENETICS IN MEDICINE, 2015, 17 (07) :578-586
[7]   The International HapMap Project [J].
Gibbs, RA ;
Belmont, JW ;
Hardenbol, P ;
Willis, TD ;
Yu, FL ;
Yang, HM ;
Ch'ang, LY ;
Huang, W ;
Liu, B ;
Shen, Y ;
Tam, PKH ;
Tsui, LC ;
Waye, MMY ;
Wong, JTF ;
Zeng, CQ ;
Zhang, QR ;
Chee, MS ;
Galver, LM ;
Kruglyak, S ;
Murray, SS ;
Oliphant, AR ;
Montpetit, A ;
Hudson, TJ ;
Chagnon, F ;
Ferretti, V ;
Leboeuf, M ;
Phillips, MS ;
Verner, A ;
Kwok, PY ;
Duan, SH ;
Lind, DL ;
Miller, RD ;
Rice, JP ;
Saccone, NL ;
Taillon-Miller, P ;
Xiao, M ;
Nakamura, Y ;
Sekine, A ;
Sorimachi, K ;
Tanaka, T ;
Tanaka, Y ;
Tsunoda, T ;
Yoshino, E ;
Bentley, DR ;
Deloukas, P ;
Hunt, S ;
Powell, D ;
Altshuler, D ;
Gabriel, SB ;
Qiu, RZ .
NATURE, 2003, 426 (6968) :789-796
[8]   Protein structure prediction and analysis using the Robetta server [J].
Kim, DE ;
Chivian, D ;
Baker, D .
NUCLEIC ACIDS RESEARCH, 2004, 32 :W526-W531
[9]   Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm [J].
Kumar, Prateek ;
Henikoff, Steven ;
Ng, Pauline C. .
NATURE PROTOCOLS, 2009, 4 (07) :1073-1082
[10]   Design and Characterization of Modular Scaffolds for Tubulin Assembly [J].
Mignot, Ingrid ;
Pecqueur, Ludovic ;
Dorleans, Audrey ;
Karuppasamy, Manikandan ;
Ravelli, Raimond B. G. ;
Dreier, Birgit ;
Plueckthun, Andreas ;
Knossow, Marcel ;
Gigant, Benoit .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (37) :31085-31094