Transcriptome Analysis of Pinellia integrifolia and PEBP Genes Identification in Related Species

被引：1
作者：
Liu, Dan [1 ]
Luo, Rui [1 ]
Chen, Haili [1 ]
Gao, Huaxia [1 ]
Xia, Lisha [1 ]
机构：
[1] Guizhou Univ, Dept Life Sci, Guiyang 550025, Guizhou, Peoples R China
来源：
INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY | 2018年 / 20卷 / 05期
基金：
中国国家自然科学基金;
关键词：
Pinellia integrifolia; De novo sequencing; Bulbil development; PEBP gene family; BULBIL FORMATION; MORPHOLOGICAL OBSERVATION; AGAVE-TEQUILANA; GESNERIACEAE; EXPRESSION; GENOMICS; TERNATA; FAMILY; TOOL;
D O I：
10.17957/IJAB/15.0585
中图分类号：
S [农业科学];
学科分类号：
09 ;
摘要：
The transcriptome analysis of Pinella integrifolia was carried out in this study to study its bulbil development at molecular level. Approximately 44.12 Mb high-quality clean reads were generated, and 74,550 unigenes that possess an average length of 831 bp were assembled de novo. A total of 44,626 unigenes (59.86%) were annotated in the database, 40,900 unigenes had blasted to the Nr database, and 6,112 and 16,797 unigenes had similar hits in the Gene Ontology (GO) and Cluster of Orthologous Groups (COG) databases, respectively. Results revealed that 31,851 unigenes were assigned to 135 KEGG pathways. Based on transcriptomic data, various members of PEBP gene family were identified in P. integrifolia, A. bulbifer, P. ternata and Colocasia esculenta. These data could be utilized in further research such as explorations of bulbil development in Pinellia. (C) 2018 Friends Science Publishers
引用
收藏
页码：975 / 980
页数：6
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