A large multi-breed reference panel and maximizes genotype imputation accuracy in cattle.

被引：0
|
作者：
Rowan, Troy [1 ]
Hoff, Jesse L. [1 ]
Crum, Tamar [1 ]
Taylor, Jerry F. [1 ]
Schnabel, Robert [1 ]
Decker, Jared E. [1 ]
机构：
[1] Univ Missouri, Columbia, MO 65211 USA
来源：
JOURNAL OF ANIMAL SCIENCE | 2019年 / 97卷
关键词：
cattle; imputation; SNP; genomics; genomic prediction; GWAS;
D O I：
10.1093/jas/skz122.033
中图分类号：
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号：
0905 ;
摘要：
36
引用
收藏
页码：18 / 18
页数：1
相关论文
共 50 条
  • [1] A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle
    Troy N. Rowan
    Jesse L. Hoff
    Tamar E. Crum
    Jeremy F. Taylor
    Robert D. Schnabel
    Jared E. Decker
    Genetics Selection Evolution, 51
  • [2] A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle
    Rowan, Troy N.
    Hoff, Jesse L.
    Crum, Tamar E.
    Taylor, Jeremy F.
    Schnabel, Robert D.
    Decker, Jared E.
    GENETICS SELECTION EVOLUTION, 2019, 51 (01)
  • [3] A comprehensive evaluation of factors affecting the accuracy of pig genotype imputation using a single or multi-breed reference population
    ZHANG Kai-li
    PENG Xia
    ZHANG Sai-xian
    ZHAN Hui-wen
    LU Jia-hui
    XIE Sheng-song
    ZHAO Shu-hong
    LI Xin-yun
    MA Yun-long
    JournalofIntegrativeAgriculture, 2022, 21 (02) : 486 - 495
  • [4] A comprehensive evaluation of factors affecting the accuracy of pig genotype imputation using a single or multi-breed reference population
    Zhang Kai-li
    Peng Xia
    Zhang Sai-xian
    Zhan Hui-wen
    Lu Jia-hui
    Xie Sheng-song
    Zhao Shu-hong
    Li Xin-yun
    Ma Yun-long
    JOURNAL OF INTEGRATIVE AGRICULTURE, 2022, 21 (02) : 486 - 495
  • [5] Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle
    Rasmus Froberg Brøndum
    Bernt Guldbrandtsen
    Goutam Sahana
    Mogens Sandø Lund
    Guosheng Su
    BMC Genomics, 15
  • [6] Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population
    Ventura, Ricardo V.
    Miller, Stephen P.
    Dodds, Ken G.
    Auvray, Benoit
    Lee, Michael
    Bixley, Matthew
    Clarke, Shannon M.
    McEwan, John C.
    GENETICS SELECTION EVOLUTION, 2016, 48
  • [7] Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population
    Ricardo V. Ventura
    Stephen P. Miller
    Ken G. Dodds
    Benoit Auvray
    Michael Lee
    Matthew Bixley
    Shannon M. Clarke
    John C. McEwan
    Genetics Selection Evolution, 48
  • [8] Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle
    Brondum, Rasmus Froberg
    Guldbrandtsen, Bernt
    Sahana, Goutam
    Lund, Mogens Sando
    Su, Guosheng
    BMC GENOMICS, 2014, 15
  • [9] Accuracy of genomic breeding values in multi-breed dairy cattle populations
    Hayes, Ben J.
    Bowman, Phillip J.
    Chamberlain, Amanda C.
    Verbyla, Klara
    Goddard, Mike E.
    GENETICS SELECTION EVOLUTION, 2009, 41
  • [10] Accuracy of genomic breeding values in multi-breed dairy cattle populations
    Ben J Hayes
    Phillip J Bowman
    Amanda C Chamberlain
    Klara Verbyla
    Mike E Goddard
    Genetics Selection Evolution, 41
12345