Gracilimonas tropica gen. nov., sp nov., isolated from a Synechococcus culture

被引:33
作者
Choi, Dong H. [3 ]
Zhang, Gwang I. [1 ,2 ]
Noh, Jae H. [3 ]
Kim, Woong-Seo [3 ]
Cho, Byung C. [1 ,2 ]
机构
[1] Seoul Natl Univ, Sch Earth & Environm Sci, Seoul 151742, South Korea
[2] Seoul Natl Univ, Res Inst Oceanog, Seoul 151742, South Korea
[3] Korea Ocean Res & Dev Inst, Open & Trop Res Div, Ansan 426744, South Korea
关键词
DEOXYRIBONUCLEIC-ACID; BACTERIUM; IDENTIFICATION;
D O I
10.1099/ijs.0.005512-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
An irregular, long, rod-shaped marine bacterium, designated CL-CB462(T), was isolated from a Synechococcus culture, which was established from surface water from the tropical Pacific Ocean. The physiological and biochemical features, fatty acid profile and phylogenetic position based on 16S rRNA gene sequences were investigated for the novel strain. Phylogenetic analysis of the 16S rRNA gene sequence showed that the closest relatives of strain CL-CB462(T) were Balneola vulgaris and Balneola alkaliphila. Strain CL-CB462(T) formed a robust Glade with members of the genus Balneola in all phylogenetic trees constructed by three different methods. However, the 16S rRNA gene sequence similarity was very low (91.3-91.5% similarity) and phenotypic and physiological features could clearly differentiate strain CL-CB462(T) from the genus Balneola. Cells of the novel strain were non-motile and spore-forming. The strain was able to grow at 1-20% (w/v) (optimum of 3-6%) sea salt concentration, at temperatures of 2040 degrees C and between pH 6 and 10. The fatty acids were dominated by 15: 0 iso (41.2%) and 17: 1 omega 9c iso (21.4%). The DNA G + C content was 42.7 mol%. Based on polyphasic evidence, strain CL-CB462(T) was considered to represent a new genus. The name Gracilimonas tropica gen. nov., sp. nov. is proposed for the type strain of the type species (CL-CB462(T)=KCCM 90063(T)=DSM 19535(T)).
引用
收藏
页码:1167 / 1172
页数:6
相关论文
共 25 条
[1]  
ALFREDSSON GA, 1988, J GEN MICROBIOL, V134, P299
[2]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[3]  
Bernardet JF, 2002, INT J SYST EVOL MICR, V52, P1049, DOI [10.1099/ijs.0.02136-0, 10.1099/00207713-52-3-1049]
[4]   Muricauda ruestringensis gen. nov., sp nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment [J].
Bruns, A ;
Rohde, M ;
Berthe-Corti, L .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :1997-2006
[5]   A rapid DNA isolation procedure for the identification of Campylobacter jejuni by the polymerase chain reaction [J].
Englen, MD ;
Kelley, LC .
LETTERS IN APPLIED MICROBIOLOGY, 2000, 31 (06) :421-426
[6]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&
[7]   STUDIES OF MARINE PLANKTONIC DIATOMS .1. CYCLOTELLA NANA HUSTEDT, AND DETONULA CONFERVACEA (CLEVE) GRAN [J].
GUILLARD, RR ;
RYTHER, JH .
CANADIAN JOURNAL OF MICROBIOLOGY, 1962, 8 (02) :229-&
[8]  
HANSEN GH, 1991, J MICROBIOL METH, V13, P231
[9]  
Jukes TH., 1969, Evolution of protein molecules, P21
[10]  
LANE DJ, 1991, NUCL ACID TECHNIQUES, V115, P175, DOI DOI 10.4135/9781446279281.N7