Microbial community dynamics revisited

被引:2
作者
Ji, Boyang [1 ]
Herrgard, Markus J. [1 ]
Nielsen, Jens [1 ]
机构
[1] Bioinnovat Inst, Copenhagen, Denmark
来源
NATURE COMPUTATIONAL SCIENCE | 2021年 / 1卷 / 10期
关键词
D O I
10.1038/s43588-021-00144-6
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
A framework called EPICS predicts microbial community structures by estimating effective pairwise interactions in an efficient and scalable way.
引用
收藏
页码:640 / 641
页数:2
相关论文
共 10 条
  • [1] Ansari A. F., 2021, NAT COMPUT SCI, DOI [10.1038/s43588-021-00131-x, DOI 10.1038/S43588-021-00131-X]
  • [2] Microbiome-wide association studies link dynamic microbial consortia to disease
    Gilbert, Jack A.
    Quinn, Robert A.
    Debelius, Justine
    Xu, Zhenjiang Z.
    Morton, James
    Garg, Neha
    Jansson, Janet K.
    Dorrestein, Pieter C.
    Knight, Rob
    [J]. NATURE, 2016, 535 (7610) : 94 - 103
  • [3] Microbiome interactions shape host fitness
    Gould, Alison L.
    Zhang, Vivian
    Lamberti, Lisa
    Jones, Eric W.
    Obadia, Benjamin
    Korasidis, Nikolaos
    Gavryushkin, Alex
    Carlson, Jean M.
    Beerenwinkel, Niko
    Ludington, William B.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (51) : E11951 - E11960
  • [4] A complex human gut microbiome cultured in an anaerobic intestine-on-a-chip
    Jalili-Firoozinezhad, Sasan
    Gazzaniga, Francesca S.
    Calamari, Elizabeth L.
    Camacho, Diogo M.
    Fadel, Cicely W.
    Bein, Amir
    Swenor, Ben
    Nestor, Bret
    Cronce, Michael J.
    Tovaglieri, Alessio
    Levy, Oren
    Gregory, Katherine E.
    Breault, David T.
    Cabral, Joaquim M. S.
    Kasper, Dennis L.
    Novak, Richard
    Ingber, Donald E.
    [J]. NATURE BIOMEDICAL ENGINEERING, 2019, 3 (07) : 520 - 531
  • [5] Principles for designing synthetic microbial communities
    Johns, Nathan I.
    Blazejewski, Tomasz
    Gomes, Antonio L. C.
    Wang, Harris H.
    [J]. CURRENT OPINION IN MICROBIOLOGY, 2016, 31 : 146 - 153
  • [6] Modelling approaches for studying the microbiome
    Kumar, Manish
    Ji, Boyang
    Zengler, Karsten
    Nielsen, Jens
    [J]. NATURE MICROBIOLOGY, 2019, 4 (08) : 1253 - 1267
  • [7] Predictive biology: modelling, understanding and harnessing microbial complexity
    Lopatkin, Allison J.
    Collins, James J.
    [J]. NATURE REVIEWS MICROBIOLOGY, 2020, 18 (09) : 507 - 520
  • [8] Towards a deeper understanding of microbial communities: integrating experimental data with dynamic models
    Qian, Yili
    Lan, Freeman
    Venturelli, Ophelia S.
    [J]. CURRENT OPINION IN MICROBIOLOGY, 2021, 62 : 84 - 92
  • [9] High-order interactions distort the functional landscape of microbial consortia
    Sanchez-Gorostiaga, Alicia
    Bajic, Djordje
    Osborne, Melisa L.
    Poyatos, Juan F.
    Sanchez, Alvaro
    [J]. PLOS BIOLOGY, 2019, 17 (12)
  • [10] Widder S., 2016, ISME J, V10, P2557, DOI [10.1038/ismej.2016.45, DOI 10.1038/ISMEJ.2016.45, DOI 10.1038/ISMEJ/2011.31]