Diffusion-influenced reactions involving a reactant with two active sites

被引:21
|
作者
Kang, Aeri [1 ]
Kim, Ji-Hyun [1 ]
Lee, Sangyoub [1 ]
Park, Hwangseo [2 ]
机构
[1] Seoul Natl Univ, Dept Chem, Seoul 151747, South Korea
[2] Sejong Univ, Dept Biosci & Biotechnol, Seoul 143747, South Korea
来源
JOURNAL OF CHEMICAL PHYSICS | 2009年 / 130卷 / 09期
关键词
biochemistry; chemical reactions; reaction kinetics theory; reaction rate constants; reaction-diffusion systems; EXTENDED BROWNIAN DYNAMICS; TIME-DEPENDENT RATE; ANISOTROPIC REACTIVITY; BIMOLECULAR REACTIONS; ORIENTATION CONSTRAINTS; LIGAND-BINDING; REACTION-RATES; MOLECULES; KINETICS; SIMULATION;
D O I
10.1063/1.3082010
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We consider the kinetics of diffusion-influenced reactions which involve a reactant species that can be modeled as a sphere with two reactive patches located on its surface at an arbitrary angular distance. An approximate analytic expression for the rate coefficient is derived based on the Wilemski-Fixman-Weiss decoupling approximation and a multivariable Pade approximation. The accuracy of the rate expression is evaluated against computer simulations as well as an exact analytic expression available for a special case. The present theory provides accurate estimates for the magnitude of diffusive interference effects between the two reactive patches. We also present an efficient Brownian dynamics method for calculating the time-dependent rate coefficient, which is applicable when the reactants involve multiple active sites.
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页数:8
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