Effect of electrostatic force truncation on interfacial and transport properties of water

被引:326
作者
Feller, SE
Pastor, RW
Rojnuckarin, A
Bogusz, S
Brooks, BR
机构
[1] US FDA, CTR BIOL EVALUAT & RES, BIOL LAB, ROCKVILLE, MD 20852 USA
[2] UNIV WISCONSIN, DEPT CHEM ENGN, MADISON, WI 53706 USA
[3] WALTER REED ARMY INST RES, DEPT GASTROENTEROL, WASHINGTON, DC 20307 USA
[4] NIH, DIV COMP RES & TECHNOL, STRUCT BIOL LAB, BETHESDA, MD 20892 USA
关键词
D O I
10.1021/jp9614658
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The importance of accurately accounting for all Coulombic forces in molecular dynamics simulations of water at interfaces is demonstrated by comparing the Ewald summation technique with various spherical truncation methods, The increased structure induced by truncation methods at 12 Angstrom leads to water/vapor surface tensions and surface potentials that are respectively 50% and 100% greater than obtained with Ewald. The orientational polarization of water at the lipid/water interface is analyzed within the Marcelja-Radic theory of the hydration force, yielding decay parameters of 2.6 and 1.8 Angstrom for spherical truncation and Ewald, respectively, as compared with 1.7-2.1 Angstrom obtained from experiment. Bulk water transport properties such as the viscosity and diffusion constants differ by as much as 100% between simulations carried out with and without truncation; this may be related to ordering in the neighborhood of the cutoff radius. The diffusion constant calculated from the Ewald simulation is significantly further from experiment than the cutoff result, pointing out the need to reparametrize the TIP3P water model for use with Ewald summation. Appendices describe a method for carrying out the Ewald summation on a distributed memory parallel computer and other computational details relevant when simulating large systems.
引用
收藏
页码:17011 / 17020
页数:10
相关论文
共 52 条
[1]  
Abramowitz M, 1964, Handbook of mathematical functions
[2]   MOLECULAR-DYNAMICS SIMULATION OF THE ORTHOBARIC DENSITIES AND SURFACE-TENSION OF WATER [J].
ALEJANDRE, J ;
TILDESLEY, DJ ;
CHAPELA, GA .
JOURNAL OF CHEMICAL PHYSICS, 1995, 102 (11) :4574-4583
[3]  
Allen M.P., 1987, Computer Simulation of Liquids, DOI DOI 10.1093/OSO/9780198803195.001.0001
[4]   COMPUTER-SIMULATION OF A PHOSPHOLIPID MONOLAYER-WATER SYSTEM - THE INFLUENCE OF LONG-RANGE FORCES ON WATER-STRUCTURE AND DYNAMICS [J].
ALPER, HE ;
BASSOLINO, D ;
STOUCH, TR .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :9798-9807
[5]   COMPUTER-SIMULATION OF A WATER MEMBRANE INTERFACE [J].
BERKOWITZ, ML ;
RAGHAVAN, K .
LANGMUIR, 1991, 7 (06) :1042-1044
[6]   ACCELERATED MOLECULAR-DYNAMICS SIMULATION WITH THE PARALLEL FAST MULTIPOLE ALGORITHM [J].
BOARD, JA ;
CAUSEY, JW ;
LEATHRUM, JF ;
WINDEMUTH, A ;
SCHULTEN, K .
CHEMICAL PHYSICS LETTERS, 1992, 198 (1-2) :89-94
[7]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[8]   STRUCTURAL AND ENERGETIC EFFECTS OF TRUNCATING LONG RANGED INTERACTIONS IN IONIC AND POLAR FLUIDS [J].
BROOKS, CL ;
PETTITT, BM ;
KARPLUS, M .
JOURNAL OF CHEMICAL PHYSICS, 1985, 83 (11) :5897-5908
[9]   PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092
[10]   SIMULATION OF ELECTROSTATIC SYSTEMS IN PERIODIC BOUNDARY-CONDITIONS .1. LATTICE SUMS AND DIELECTRIC-CONSTANTS [J].
DELEEUW, SW ;
PERRAM, JW ;
SMITH, ER .
PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 1980, 373 (1752) :27-56