共 25 条
Effective strategy to assign 1H-15N heteronuclear correlation NMR signals from lysine side-chain NH3+ groups of proteins at low temperature
被引:18
作者:

Esadze, Alexandre
论文数: 0 引用数: 0
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机构:
Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Zandarashvili, Levani
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h-index: 0
机构:
Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Iwahara, Junji
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h-index: 0
机构:
Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA
机构:
[1] Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA
基金:
美国国家卫生研究院;
关键词:
Proteins;
Side chains;
Lysine;
NH3+ groups;
H-1/C-13/N-15;
resonances;
LABELED PROTEINS;
ZINC FINGERS;
SALT BRIDGES;
SPECTROSCOPY;
DYNAMICS;
EXCHANGE;
SEQUENCE;
SEARCH;
PULSES;
DOMAIN;
D O I:
10.1007/s10858-014-9854-y
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Recent studies have shown that lysine side-chain NH3 (+) groups are excellent probes for NMR investigations of dynamics involving hydrogen bonds and ion pairs relevant to protein function. However, due to rapid hydrogen exchange, observation of H-1-N-15 NMR cross peaks from lysine NH3 (+) groups often requires use of a relatively low temperature, which renders difficulty in resonance assignment. Here we present an effective strategy to assign H-1 and N-15 resonances of NH3 (+) groups at low temperatures. This strategy involves two new H-1/C-13/N-15 triple-resonance experiments for lysine side chains. Application to a protein-DNA complex is demonstrated.
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收藏
页码:23 / 27
页数:5
相关论文
共 25 条
[1]
Direct Observation of the Ion-Pair Dynamics at a Protein-DNA Interface by NMR Spectroscopy
[J].
Anderson, Kurtis M.
;
Esadze, Alexandre
;
Manoharan, Mariappan
;
Brueschweiler, Rafael
;
Gorenstein, David G.
;
Iwahara, Junji
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2013, 135 (09)
:3613-3619

Anderson, Kurtis M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA
Univ Texas Hlth Sci Ctr Houston, Inst Mol Med, Dept NanoMed & Biomed Engn, Houston, TX 77030 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Esadze, Alexandre
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Manoharan, Mariappan
论文数: 0 引用数: 0
h-index: 0
机构:
Florida State Univ, Dept Chem & Biochem, Chem Sci Lab, Tallahassee, FL 32306 USA
Florida State Univ, Natl High Magnet Field Lab, Tallahassee, FL 32306 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Brueschweiler, Rafael
论文数: 0 引用数: 0
h-index: 0
机构:
Florida State Univ, Dept Chem & Biochem, Chem Sci Lab, Tallahassee, FL 32306 USA
Florida State Univ, Natl High Magnet Field Lab, Tallahassee, FL 32306 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Gorenstein, David G.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Hlth Sci Ctr Houston, Inst Mol Med, Dept NanoMed & Biomed Engn, Houston, TX 77030 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Iwahara, Junji
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA
[2]
Lysine and Arginine Side Chains in Glycosaminoglycan-Protein Complexes Investigated by NMR, Cross-Linking, and Mass Spectrometry: A Case Study of the Factor H-Heparin Interaction
[J].
Blaum, Baerbel S.
;
Deakin, Jon A.
;
Johansson, Conny M.
;
Herbert, Andrew P.
;
Barlow, Paul N.
;
Lyon, Malcolm
;
Uhrin, Dusan
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2010, 132 (18)
:6374-6381

Blaum, Baerbel S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland
Univ Edinburgh, Sch Biol Sci, Edinburgh EH9 3JJ, Midlothian, Scotland Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland

Deakin, Jon A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Manchester, Canc Res UK Glycooncol Grp, Sch Canc & Imaging Sci, Paterson Inst Canc Res, Manchester M20 4BX, Lancs, England Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland

Johansson, Conny M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland
Univ Edinburgh, Sch Biol Sci, Edinburgh EH9 3JJ, Midlothian, Scotland Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland

Herbert, Andrew P.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland
Univ Edinburgh, Sch Biol Sci, Edinburgh EH9 3JJ, Midlothian, Scotland Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland

Barlow, Paul N.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland
Univ Edinburgh, Sch Biol Sci, Edinburgh EH9 3JJ, Midlothian, Scotland Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland

Lyon, Malcolm
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Manchester, Canc Res UK Glycooncol Grp, Sch Canc & Imaging Sci, Paterson Inst Canc Res, Manchester M20 4BX, Lancs, England Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland

Uhrin, Dusan
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland
Univ Edinburgh, Sch Biol Sci, Edinburgh EH9 3JJ, Midlothian, Scotland Univ Edinburgh, Edinburgh Biomol NMR Unit, Sch Chem, Edinburgh EH9 3JJ, Midlothian, Scotland
[3]
Positive and negative impacts of nonspecific sites during target location by a sequence-specific DNA-binding protein: origin of the optimal search at physiological ionic strength
[J].
Esadze, Alexandre
;
Kemme, Catherine A.
;
Kolomeisky, Anatoly B.
;
Iwahara, Junji
.
NUCLEIC ACIDS RESEARCH,
2014, 42 (11)
:7039-7046

Esadze, Alexandre
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA

Kemme, Catherine A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA

Kolomeisky, Anatoly B.
论文数: 0 引用数: 0
h-index: 0
机构:
Rice Univ, Dept Chem, Houston, TX 77005 USA
Rice Univ, Ctr Theoret Biol Phys, Houston, TX 77005 USA Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA

Iwahara, Junji
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA
[4]
Stopped-Flow Fluorescence Kinetic Study of Protein Sliding and Intersegment Transfer in the Target DNA Search Process
[J].
Esadze, Alexandre
;
Iwahara, Junji
.
JOURNAL OF MOLECULAR BIOLOGY,
2014, 426 (01)
:230-244

Esadze, Alexandre
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA

Iwahara, Junji
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA Univ Texas Med Branch, Sealy Ctr Struct Biol & Mol Biophys, Dept Biochem & Mol Biol, Galveston, TX 77555 USA
[5]
Dynamics of Lysine Side-Chain Amino Groups in a Protein Studied by Heteronuclear 1H-15N NMR Spectroscopy
[J].
Esadze, Alexandre
;
Li, Da-Wei
;
Wang, Tianzhi
;
Brueschweiler, Rafael
;
Iwahara, Junji
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2011, 133 (04)
:909-919

Esadze, Alexandre
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Li, Da-Wei
论文数: 0 引用数: 0
h-index: 0
机构:
Florida State Univ, Chem Sci Lab, Dept Chem & Biochem, Tallahassee, FL 32306 USA
Florida State Univ, Natl High Magnet Field Lab, Tallahassee, FL 32306 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Wang, Tianzhi
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Brueschweiler, Rafael
论文数: 0 引用数: 0
h-index: 0
机构:
Florida State Univ, Chem Sci Lab, Dept Chem & Biochem, Tallahassee, FL 32306 USA
Florida State Univ, Natl High Magnet Field Lab, Tallahassee, FL 32306 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA

Iwahara, Junji
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA Univ Texas Med Branch, Dept Biochem & Mol Biol, Sealy Ctr Struct Biol & Mol Biophys, Galveston, TX 77555 USA
[6]
Use of C-13-C-13 NOE for the assignment of NMR lines of larger labeled proteins at larger magnetic fields
[J].
Fischer, MWF
;
Zeng, L
;
Zuiderweg, ERP
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
1996, 118 (49)
:12457-12458

Fischer, MWF
论文数: 0 引用数: 0
h-index: 0
机构: UNIV MICHIGAN,DIV BIOPHYS RES,ANN ARBOR,MI 48109

Zeng, L
论文数: 0 引用数: 0
h-index: 0
机构: UNIV MICHIGAN,DIV BIOPHYS RES,ANN ARBOR,MI 48109

Zuiderweg, ERP
论文数: 0 引用数: 0
h-index: 0
机构: UNIV MICHIGAN,DIV BIOPHYS RES,ANN ARBOR,MI 48109
[7]
Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA
[J].
Foster, MP
;
Wuttke, DS
;
Radhakrishnan, I
;
Case, DA
;
Gottesfeld, JM
;
Wright, PE
.
NATURE STRUCTURAL BIOLOGY,
1997, 4 (08)
:605-608

Foster, MP
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, SKAGGS INST CHEM BIOL, LA JOLLA, CA 92037 USA

Wuttke, DS
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, SKAGGS INST CHEM BIOL, LA JOLLA, CA 92037 USA

Radhakrishnan, I
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, SKAGGS INST CHEM BIOL, LA JOLLA, CA 92037 USA

Case, DA
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, SKAGGS INST CHEM BIOL, LA JOLLA, CA 92037 USA

Gottesfeld, JM
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, SKAGGS INST CHEM BIOL, LA JOLLA, CA 92037 USA

Wright, PE
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, SKAGGS INST CHEM BIOL, LA JOLLA, CA 92037 USA
[8]
BAND-SELECTIVE RADIOFREQUENCY PULSES
[J].
GEEN, H
;
FREEMAN, R
.
JOURNAL OF MAGNETIC RESONANCE,
1991, 93 (01)
:93-141

GEEN, H
论文数: 0 引用数: 0
h-index: 0
机构: Department of Chemistrv, University of Cambridge, Cambridge

FREEMAN, R
论文数: 0 引用数: 0
h-index: 0
机构: Department of Chemistrv, University of Cambridge, Cambridge
[9]
CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data
[J].
Huang, Jing
;
MacKerell, Alexander D., Jr.
.
JOURNAL OF COMPUTATIONAL CHEMISTRY,
2013, 34 (25)
:2135-2145

Huang, Jing
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Sch Pharm, Dept Pharmaceut Sci, Baltimore, MD 21201 USA Univ Maryland, Sch Pharm, Dept Pharmaceut Sci, Baltimore, MD 21201 USA

MacKerell, Alexander D., Jr.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Sch Pharm, Dept Pharmaceut Sci, Baltimore, MD 21201 USA Univ Maryland, Sch Pharm, Dept Pharmaceut Sci, Baltimore, MD 21201 USA
[10]
Heteronuclear NMR spectroscopy for lysine NH3 groups in proteins:: Unique effect of water exchange on 15N transverse relaxation
[J].
Iwahara, Junji
;
Jung, Young-Sang
;
Clore, G. Marius
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2007, 129 (10)
:2971-2980

Iwahara, Junji
论文数: 0 引用数: 0
h-index: 0
机构:
NIDDKD, Phys Chem Lab, NIH, Bethesda, MD 20892 USA NIDDKD, Phys Chem Lab, NIH, Bethesda, MD 20892 USA

Jung, Young-Sang
论文数: 0 引用数: 0
h-index: 0
机构:
NIDDKD, Phys Chem Lab, NIH, Bethesda, MD 20892 USA NIDDKD, Phys Chem Lab, NIH, Bethesda, MD 20892 USA

Clore, G. Marius
论文数: 0 引用数: 0
h-index: 0
机构:
NIDDKD, Phys Chem Lab, NIH, Bethesda, MD 20892 USA NIDDKD, Phys Chem Lab, NIH, Bethesda, MD 20892 USA