Margin based ontology sparse vector learning algorithm and applied in biology science

被引:90
作者
Gao, Wei [1 ]
Baig, Abdul Qudair [2 ]
Ali, Haidar [2 ]
Sajjad, Wasim [2 ]
Farahani, Mohammad Reza [3 ]
机构
[1] Yunnan Normal Univ, Sch Informat Sci & Technol, Kunming 650500, Peoples R China
[2] COMSATS Inst Informat Technol, Dept Math, Attock, Pakistan
[3] Iran Univ Sci & Technol, Dept Appl Math, Tehran 16844, Iran
关键词
Ontology; Similarity measure; Sparse vector; Margin; CROSS-VALIDATION; SYSTEMS; NETWORK; SUPPORT;
D O I
10.1016/j.sjbs.2016.09.001
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
In biology field, the ontology application relates to a large amount of genetic information and chemical information of molecular structure, which makes knowledge of ontology concepts convey much information. Therefore, in mathematical notation, the dimension of vector which corresponds to the ontology concept is often very large, and thus improves the higher requirements of ontology algorithm. Under this background, we consider the designing of ontology sparse vector algorithm and application in biology. In this paper, using knowledge of marginal likelihood and marginal distribution, the optimized strategy of marginal based ontology sparse vector learning algorithm is presented. Finally, the new algorithm is applied to gene ontology and plant ontology to verify its efficiency. (C) 2016 The Authors. Production and hosting by Elsevier B.V. on behalf of King Saud University.
引用
收藏
页码:132 / 138
页数:7
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