Isabl Platform, a digital biobank for processing multimodal patient data

被引:36
|
作者
Medina-Martinez, Juan S. [1 ,2 ]
Arango-Ossa, Juan E. [1 ]
Levine, Max F. [1 ]
Zhou, Yangyu [1 ]
Gundem, Gunes [1 ]
Kung, Andrew L. [1 ]
Papaemmanuil, Elli [1 ]
机构
[1] Mem Sloan Kettering Canc Ctr, 1275 York Ave, New York, NY 10021 USA
[2] Isabl Inc, New York, NY USA
关键词
Data processing; Analysis information management system; Next generation sequencing; Genomics; Image processing; Software engineering; Multimodal data; SYSTEM;
D O I
10.1186/s12859-020-03879-7
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Background The widespread adoption of high throughput technologies has democratized data generation. However, data processing in accordance with best practices remains challenging and the data capital often becomes siloed. This presents an opportunity to consolidate data assets into digital biobanks-ecosystems of readily accessible, structured, and annotated datasets that can be dynamically queried and analysed. Results We present Isabl, a customizable plug-and-play platform for the processing of multimodal patient-centric data. Isabl's architecture consists of a relational database (Isabl DB), a command line client (Isabl CLI), a RESTful API (Isabl API) and a frontend web application (Isabl Web). Isabl supports automated deployment of user-validated pipelines across the entire data capital. A full audit trail is maintained to secure data provenance, governance and ensuring reproducibility of findings. Conclusions As a digital biobank, Isabl supports continuous data utilization and automated meta analyses at scale, and serves as a catalyst for research innovation, new discoveries, and clinical translation.
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页数:18
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