Application of XPS and ToF-SIMS for surface chemical analysis of DNA microarrays and their substrates

被引:26
作者
Graf, Nora [1 ]
Gross, Thomas [1 ]
Wirth, Thomas [1 ]
Weigel, Wilfried [2 ]
Unger, Wolfgang E. S. [1 ]
机构
[1] BAM Fed Inst Mat Res & Testing, D-12203 Berlin, Germany
[2] Scienion AG, D-12489 Berlin, Germany
关键词
Microarrays; Surface analysis; XPS; ToF-SIMS; Chemical imaging; PNA MICROARRAYS; FLUORESCENCE; SPECTROSCOPY; DIAGNOSTICS; COVERAGE; SCIENCE; NEXAFS;
D O I
10.1007/s00216-009-2599-x
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The chemical composition of the functional surfaces of substrates used for microarrays is one of the important parameters that determine the quality of a microarray experiment. In addition to the commonly used contact angle measurements to determine the wettability of functionalized supports, X-ray photoelectron spectroscopy (XPS) and time-of-flight secondary ion mass spectrometry (ToF-SIMS) are more specific methods to elucidate details about the chemical surface constitution. XPS yields information about the atomic composition of the surface, whereas from ToF-SIMS, information on the molecular species on the surface can be concluded. Applied on printed DNA microarrays, both techniques provide impressive chemical images down to the micrometer scale and can be utilized for label-free spot detection and characterization. Detailed information about the chemical constitution of single spots of microarrays can be obtained by high-resolution XPS imaging.
引用
收藏
页码:1907 / 1912
页数:6
相关论文
共 24 条
[11]  
Cronin Maureen, 2004, Clin Chem, V50, P1464, DOI 10.1373/clinchem.2004.035675
[12]   Multi-technique comparison of immobilized and hybridized oligonucleotide surface density on commercial amine-reactive microarray slides [J].
Gong, P ;
Harbers, GM ;
Grainger, DW .
ANALYTICAL CHEMISTRY, 2006, 78 (07) :2342-2351
[13]   Optimization of cleaning and amino-silanization protocols for Si wafers to be used as platforms for biochip microarrays by surface analysis (XPS, ToF-SIMS and NEXAFS spectroscopy) [J].
Graf, Nora ;
Yegen, Eda ;
Lippitz, Andreas ;
Treu, Dieter ;
Wirth, Thomas ;
Unger, Wolfgang E. S. .
SURFACE AND INTERFACE ANALYSIS, 2008, 40 (3-4) :180-183
[14]   Quantitative TOF-SIMS imaging of DNA microarrays produced by bubble jet printing technique and the role of TOF-SIMS in life science industry [J].
Hashimoto, H ;
Nakamura, K ;
Takase, H ;
Okamoto, T ;
Yamamoto, N .
APPLIED SURFACE SCIENCE, 2004, 231 :385-391
[15]   Mass spectrometric characterization of DNA microarrays as a function of primary ion species [J].
Hellweg, S. ;
Jacob, A. ;
Hoheisel, J. D. ;
Grehl, T. ;
Arlinghaus, H. F. .
APPLIED SURFACE SCIENCE, 2006, 252 (19) :6742-6745
[16]   Influence of different primary ion species on the secondary ion emission from PNA/DNA biosensor surfaces [J].
Hellweg, Sebastian ;
Heile, Andreas ;
Grehl, Thomas ;
Arlinghaus, Heinrich F. .
SURFACE AND INTERFACE ANALYSIS, 2008, 40 (3-4) :198-201
[17]  
*ISO, 193182004 ISO
[18]  
*ISO, 154722001 ISO
[19]   A perspective on microarrays: current applications, pitfalls, and potential uses [J].
Jaluria, Pratik ;
Konstantopoulos, Konstantinos ;
Betenbaugh, Michael ;
Shiloach, Joseph .
MICROBIAL CELL FACTORIES, 2007, 6 (1)
[20]   Fluorescence, XPS, and TOF-SIMS surface chemical state image analysis of DNA microarrays [J].
Lee, Chi-Ying ;
Harbers, Gregory M. ;
Grainger, David W. ;
Gamble, Lara J. ;
Castner, David G. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (30) :9429-9438