Estimation of Symmetry-Constrained Gaussian Graphical Models: Application to Clustered Dense Networks

被引:11
作者
Gao, Xin [1 ]
Massam, Helene [1 ]
机构
[1] York Univ, Dept Math & Stat, Toronto, ON M3J 2R7, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
Concentration matrix; Gene networks; Model selection; Partial correlation matrix; Penalized estimation; Social networks; NONCONCAVE PENALIZED LIKELIHOOD; SELECTION; REGRESSION;
D O I
10.1080/10618600.2014.937811
中图分类号
O21 [概率论与数理统计]; C8 [统计学];
学科分类号
020208 ; 070103 ; 0714 ;
摘要
We propose a model selection algorithm for high-dimensional clustered data. Our algorithm combines a classical penalized likelihood method with a composite likelihood approach in the framework of colored graphical Gaussian models. Our method is designed to identify high-dimensional dense networks with a large number of edges but sparse edge classes. Its empirical performance is demonstrated through simulation studies and a network analysis of a gene expression dataset.
引用
收藏
页码:909 / 929
页数:21
相关论文
共 29 条
[1]  
[Anonymous], 2007, J STAT SOFTW
[2]  
Banerjee O, 2008, J MACH LEARN RES, V9, P485
[3]  
BESAG J, 1974, J ROY STAT SOC B MET, V36, P192
[4]   COORDINATE DESCENT ALGORITHMS FOR NONCONVEX PENALIZED REGRESSION, WITH APPLICATIONS TO BIOLOGICAL FEATURE SELECTION [J].
Breheny, Patrick ;
Huang, Jian .
ANNALS OF APPLIED STATISTICS, 2011, 5 (01) :232-253
[5]   A note on pseudolikelihood constructed from marginal densities [J].
Cox, DR ;
Reid, N .
BIOMETRIKA, 2004, 91 (03) :729-737
[6]   NETWORK EXPLORATION VIA THE ADAPTIVE LASSO AND SCAD PENALTIES [J].
Fan, Jianqing ;
Feng, Yang ;
Wu, Yichao .
ANNALS OF APPLIED STATISTICS, 2009, 3 (02) :521-541
[7]   Variable selection via nonconcave penalized likelihood and its oracle properties [J].
Fan, JQ ;
Li, RZ .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2001, 96 (456) :1348-1360
[8]   PATHWISE COORDINATE OPTIMIZATION [J].
Friedman, Jerome ;
Hastie, Trevor ;
Hoefling, Holger ;
Tibshirani, Robert .
ANNALS OF APPLIED STATISTICS, 2007, 1 (02) :302-332
[9]   Sparse inverse covariance estimation with the graphical lasso [J].
Friedman, Jerome ;
Hastie, Trevor ;
Tibshirani, Robert .
BIOSTATISTICS, 2008, 9 (03) :432-441
[10]  
Friedman Jerome, 2010, APPL LASSO GROUPED L