Unrestricted density functional theory based on the fragment molecular orbital method for the ground and excited state calculations of large systems

被引:19
|
作者
Nakata, Hiroya [1 ,2 ]
Fedorov, Dmitri G. [3 ]
Yokojima, Satoshi [2 ,4 ]
Kitaura, Kazuo [5 ]
Sakurai, Minoru [1 ]
Nakamura, Shinichiro [2 ]
机构
[1] Tokyo Inst Technol, Ctr Biol Resources & Informat, Midori Ku, Yokohama, Kanagawa 2268501, Japan
[2] RIKEN, Res Cluster Innovat, Nakamura Lab, Wako, Saitama 3510198, Japan
[3] Natl Inst Adv Ind Sci & Technol, NRI, Tsukuba, Ibaraki 3058568, Japan
[4] Tokyo Univ Pharm & Life Sci, Hachioji, Tokyo 1920392, Japan
[5] Kobe Univ, Grad Sch Syst Informat, Nada Ku, Kobe, Hyogo 6578501, Japan
关键词
POLARIZABLE CONTINUUM MODEL; CHEMICAL-SHIFT CALCULATIONS; COUPLED-CLUSTER METHOD; AB-INITIO; GEOMETRY OPTIMIZATIONS; ELECTRONIC-STRUCTURE; EXCITATION-ENERGIES; QUANTUM-CHEMISTRY; WAVE-FUNCTION; HARTREE-FOCK;
D O I
10.1063/1.4870261
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We extended the fragment molecular orbital (FMO) method interfaced with density functional theory (DFT) into spin unrestricted formalism (UDFT) and developed energy gradients for the ground state and single point excited state energies based on time-dependent DFT. The accuracy of FMO is evaluated in comparison to the full calculations without fragmentation. Electronic excitations in solvated organic radicals and in the blue copper protein, plastocyanin (PDB code: 1BXV), are reported. The contributions of solvent molecules to the electronic excitations are analyzed in terms of the fragment polarization and quantum effects such as interfragment charge transfer. (C) 2014 AIP Publishing LLC.
引用
收藏
页数:11
相关论文
共 50 条
  • [1] Excited state geometry optimizations by time-dependent density functional theory based on the fragment molecular orbital method
    Chiba, Mahito
    Fedorov, Dmitri G.
    Nagata, Takeshi
    Kitaura, Kazuo
    CHEMICAL PHYSICS LETTERS, 2009, 474 (1-3) : 227 - 232
  • [2] Fragment-Molecular-Orbital-Method-Based ab Initio NMR Chemical-Shift Calculations for Large Molecular Systems
    Gao, Qi
    Yokojima, Satoshi
    Fedorov, Dmitri G.
    Kitaura, Kazuo
    Sakurai, Minoru
    Nakamura, Shinichiro
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2010, 6 (04) : 1428 - 1444
  • [3] Analytic second derivative of the energy for density functional theory based on the three-body fragment molecular orbital method
    Nakata, Hiroya
    Fedorov, Dmitri G.
    Zahariev, Federico
    Schmidt, Michael W.
    Kitaura, Kazuo
    Gordon, Mark S.
    Nakamura, Shinichiro
    JOURNAL OF CHEMICAL PHYSICS, 2015, 142 (12)
  • [4] A molecular orbital selection approach for fast calculations of specific rotation with density functional theory
    Aharon, Tal
    Caricato, Marco
    CHIRALITY, 2020, 32 (03) : 243 - 253
  • [5] Derivatives of the approximated electrostatic potentials in unrestricted Hartree-Fock based on the fragment molecular orbital method and an application to polymer radicals
    Nakata, Hiroya
    Fedorov, Dmitri G.
    Yokojima, Satoshi
    Kitaura, Kazuo
    Nakamura, Shinichiro
    THEORETICAL CHEMISTRY ACCOUNTS, 2014, 133 (05) : 1 - 14
  • [6] Analytic Gradient for Time-Dependent Density Functional Theory Combined with the Fragment Molecular Orbital Method
    Nakata, Hiroya
    Fedorov, Dmitri G.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2023, 19 (04) : 1276 - 1285
  • [7] Efficient Geometry Optimization of Large Molecular Systems in Solution Using the Fragment Molecular Orbital Method
    Nakata, Hiroya
    Fedorov, Dmitri G.
    JOURNAL OF PHYSICAL CHEMISTRY A, 2016, 120 (49) : 9794 - 9804
  • [8] Efficient vibrational analysis for unrestricted Hartree-Fock based on the fragment molecular orbital method
    Nakata, Hiroya
    Fedorov, Dmitri G.
    Yokojima, Satoshi
    Kitaura, Kazuo
    Nakamura, Shinichiro
    CHEMICAL PHYSICS LETTERS, 2014, 603 : 67 - 74
  • [9] Diabatic-At-Construction Method for Diabatic and Adiabatic Ground and Excited States Based on Multistate Density Functional Theory
    Grofe, Adam
    Qu, Zexing
    Truhlar, Donald G.
    Li, Hui
    Gao, Jiali
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 13 (03) : 1176 - 1187
  • [10] Ground State Structure of BaFeO3: Density Functional Theory Calculations
    Rahman, Gul
    Sarwar, Saad
    JOURNAL OF SUPERCONDUCTIVITY AND NOVEL MAGNETISM, 2018, 31 (02) : 413 - 418