The Production of Nitrous Oxide by the Heme/Nonheme Diiron Center of Engineered Myoglobins (FeBMbs) Proceeds through a trans-Iron-Nitrosyl Dimer

被引:43
作者
Matsumura, Hirotoshi [1 ]
Hayashi, Takahiro [1 ]
Chakraborty, Saumen [2 ]
Lu, Yi [2 ]
Moenne-Loccoz, Pierre [1 ]
机构
[1] Oregon Hlth & Sci Univ, Inst Environm Hlth, Div Environm & Biomol Syst, Portland, OR 97239 USA
[2] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
基金
美国国家卫生研究院;
关键词
SOLUBLE GUANYLATE-CYCLASE; NO REDUCTASE-ACTIVITY; NITRIC-OXIDE; RESONANCE RAMAN; SPECTROSCOPIC CHARACTERIZATION; INFRARED CHARACTERIZATION; STRUCTURAL DYNAMICS; N2O GENERATION; CYTOCHROME-C'; AZIDO COMPLEX;
D O I
10.1021/ja410542z
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Denitrifying NO reductases are transmembrane protein complexes that are evolutionarily related to heme/copper terminal oxidases. They utilize a heme/nonheme diiron center to reduce two NO molecules to N2O. Engineering a nonheme Fe-B site within the heme distal pocket of sperm whale myoglobin has offered well-defined diiron clusters for the investigation of the mechanism of NO reduction in these unique active sites. In this study, we use FTIR spectroscopy to monitor the production of N2O in solution and to show that the presence of a distal Fe-B(II) is not sufficient to produce the expected product. However, the addition of a glutamate side chain peripheral to the diiron site allows for 50% of a productive single-turnover reaction. Unproductive reactions are characterized by resonance Raman spectroscopy as dinitrosyl complexes, where one NO molecule is bound to the heme iron to form a five-coordinate low-spin {FeNO}(7) species with nu(FeNO)(heme) and nu(NO)(heme) at 522 and 1660 cm(-1), and a second NO molecule is bound to the nonheme Fe-B site with a nu(NO)(FeB) at 1755 cm(-1). Stopped-flow UV-vis absorption coupled with rapid-freeze-quench resonance Raman spectroscopy provide a detailed map of the reaction coordinates leading to the unproductive iron-nitrosyl dimer. Unexpectedly, NO binding to FeB is kinetically favored and occurs prior to the binding of a second NO to the heme iron, leading to a (six-coordinate low-spin heme-nitrosyl/Fe-B-nitrosyl) transient dinitrosyl complex with characteristic nu(FeNO)(heme) at 570 +/- 2 cm(-1) and nu(NO)(FeB) at 1755 cm(-1). Without the addition of a peripheral glutamate, the dinitrosyl complex is converted to a dead-end product after the dissociation of the proximal histidine of the heme iron, but the added peripheral glutamate side chain in Fe(B)Mb2 lowers the rate of dissociation of the promixal histidine which in turn allows the (six-coordinate low-spin heme-nitrosyl/Fe-B-nitrosyl) transient dinitrosyl complex to decay with production of N2O at a rate of 0.7 s(-1) at 4 degrees C. Taken together, our results support the proposed trans mechanism of NO reduction in NORs.
引用
收藏
页码:2420 / 2431
页数:12
相关论文
共 61 条
[1]   NITROSYLIRON(III) HEMOGLOBIN - AUTOREDUCTION AND SPECTROSCOPY [J].
ADDISON, AW ;
STEPHANOS, JJ .
BIOCHEMISTRY, 1986, 25 (14) :4104-4113
[2]   Six- to five-coordinate heme-nitrosyl conversion in cytochrome c′ and its relevance to guanylate cyclase [J].
Andrew, CR ;
George, SJ ;
Lawson, DM ;
Eady, RR .
BIOCHEMISTRY, 2002, 41 (07) :2353-2360
[3]   The production and detoxification of a potent cytotoxin, nitric oxide, by pathogenic enteric bacteria [J].
Arkenberg, Anke ;
Runkel, Sebastian ;
Richardson, David J. ;
Rowley, Gary .
BIOCHEMICAL SOCIETY TRANSACTIONS, 2011, 39 :1876-1879
[4]   Involvement of nitric oxide in biofilm dispersal of Pseudomonas aeruginosa [J].
Barraud, Nicolas ;
Hassett, Daniel J. ;
Hwang, Sung-Hei ;
Rice, Scott A. ;
Kjelleberg, Staffan ;
Webb, Jeremy S. .
JOURNAL OF BACTERIOLOGY, 2006, 188 (21) :7344-7353
[5]   Reduction of nitric oxide in bacterial nitric oxide reductase - a theoretical model study [J].
Blomberg, L. Mattias ;
Blomberg, Margareta R. A. ;
Siegbahn, Per E. M. .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2006, 1757 (04) :240-252
[6]   Mechanism for N2O Generation in Bacterial Nitric Oxide Reductase: A Quantum Chemical Study [J].
Blomberg, Margareta R. A. ;
Siegbahn, Per E. M. .
BIOCHEMISTRY, 2012, 51 (25) :5173-5186
[7]   Complex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography [J].
Bourgeois, D ;
Vallone, B ;
Schotte, F ;
Arcovito, A ;
Miele, AE ;
Sciara, G ;
Wulff, M ;
Anfinrud, P ;
Brunori, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (15) :8704-8709
[8]  
CARVER TE, 1990, J BIOL CHEM, V265, P20007
[9]   Crystallographic analysis of the interaction of nitric oxide with quaternary-T human hemoglobin [J].
Chan, NL ;
Kavanaugh, JS ;
Rogers, PH ;
Arnone, A .
BIOCHEMISTRY, 2004, 43 (01) :118-132
[10]   Nitric oxide binding at the mononuclear active site of reduced Pyrococcus furiosus superoxide reductase [J].
Clay, MD ;
Cosper, CA ;
Jenney, FE ;
Adams, MWW ;
Johnson, MK .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (07) :3796-3801