Genomic prediction of cognitive traits in childhood and adolescence

被引:85
作者
Allegrini, A. G. [1 ]
Selzam, S. [1 ]
Rimfeld, K. [1 ]
von Stumm, S. [2 ]
Pingault, J. B. [3 ]
Plomin, R. [1 ]
机构
[1] Kings Coll London, Social Genet & Dev Psychiat Ctr, London, England
[2] Univ York, Dept Educ, York, N Yorkshire, England
[3] UCL, Div Psychol & Language Sci, Clin Educ & Hlth Psychol, London, England
基金
美国国家卫生研究院; 英国医学研究理事会; 欧洲研究理事会;
关键词
TWINS EARLY DEVELOPMENT; WIDE ASSOCIATION; GENETIC CONTRIBUTIONS; GWAS; METAANALYSIS; LOCI; ABILITY; SCAN; TEDS; DNA;
D O I
10.1038/s41380-019-0394-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Recent advances in genomics are producing powerful DNA predictors of complex traits, especially cognitive abilities. Here, we leveraged summary statistics from the most recent genome-wide association studies of intelligence and educational attainment, with highly genetically correlated traits, to build prediction models of general cognitive ability and educational achievement. To this end, we compared the performances of multi-trait genomic and polygenic scoring methods. In a representative UK sample of 7,026 children at ages 12 and 16, we show that we can now predict up to 11% of the variance in intelligence and 16% in educational achievement. We also show that predictive power increases from age 12 to age 16 and that genomic predictions do not differ for girls and boys. We found that multi-trait genomic methods were effective in boosting predictive power. Prediction accuracy varied across polygenic score approaches, however results were similar for different multi-trait and polygenic score methods. We discuss general caveats of multi-trait methods and polygenic score prediction, and conclude that polygenic scores for educational attainment and intelligence are currently the most powerful predictors in the behavioural sciences.
引用
收藏
页码:819 / 827
页数:9
相关论文
共 40 条
  • [11] The heritability of general cognitive ability increases linearly from childhood to young adulthood
    Haworth, C. M. A.
    Wright, M. J.
    Luciano, M.
    Martin, N. G.
    de Geus, E. J. C.
    van Beijsterveldt, C. E. M.
    Bartels, M.
    Posthuma, D.
    Boomsma, D. I.
    Davis, O. S. P.
    Kovas, Y.
    Corley, R. P.
    DeFries, J. C.
    Hewitt, J. K.
    Olson, R. K.
    Rhea, S-A
    Wadsworth, S. J.
    Iacono, W. G.
    McGue, M.
    Thompson, L. A.
    Hart, S. A.
    Petrill, S. A.
    Lubinski, D.
    Plomin, R.
    [J]. MOLECULAR PSYCHIATRY, 2010, 15 (11) : 1112 - 1120
  • [12] Twins Early Development Study (TEDS): A Genetically Sensitive Investigation of Cognitive and Behavioral Development From Childhood to Young Adulthood
    Haworth, Claire M. A.
    Davis, Oliver S. P.
    Plomin, Robert
    [J]. TWIN RESEARCH AND HUMAN GENETICS, 2013, 16 (01) : 117 - 125
  • [13] Molecular Genetic Contributions to Social Deprivation and Household Income in UK Biobank
    Hill, W. David
    Hagenaars, Saskia P.
    Marioni, Riccardo E.
    Harris, Sarah E.
    Liewald, David C. M.
    Davies, Gail
    Okbay, Aysu
    McIntosh, Andrew M.
    Gale, Catharine R.
    Deary, Ian J.
    [J]. CURRENT BIOLOGY, 2016, 26 (22) : 3083 - 3089
  • [14] The nature of nurture: Effects of parental genotypes
    Kong, Augustine
    Thorleifsson, Gudmar
    Frigge, Michael L.
    Vilhjalmsson, Bjarni J.
    Young, Alexander I.
    Thorgeirsson, Thorgeir E.
    Benonisdottir, Stefania
    Oddsson, Asmundur
    Halldorsson, Bjarni V.
    Masson, Gisli
    Gudbjartsson, Daniel F.
    Helgason, Agnar
    Bjornsdottir, Gyda
    Thorsteinsdottir, Unnur
    Stefansson, Kari
    [J]. SCIENCE, 2018, 359 (6374) : 424 - 428
  • [15] Multi-polygenic score approach to trait prediction
    Krapohl, E.
    Patel, H.
    Newhouse, S.
    Curtis, C. J.
    von Stumm, S.
    Dale, P. S.
    Zabaneh, D.
    Breen, G.
    O'Reilly, P. F.
    Plomin, R.
    [J]. MOLECULAR PSYCHIATRY, 2018, 23 (05) : 1368 - 1374
  • [16] Phenome-wide analysis of genome-wide polygenic scores
    Krapohl, E.
    Euesden, J.
    Zabaneh, D.
    Pingault, J-B
    Rimfeld, K.
    von Stumm, S.
    Dale, P. S.
    Breen, G.
    O'Reilly, P. F.
    Plomin, R.
    [J]. MOLECULAR PSYCHIATRY, 2016, 21 (09) : 1188 - 1193
  • [17] Genetic link between family socioeconomic status and children's educational achievement estimated from genome-wide SNPs
    Krapohl, E.
    Plomin, R.
    [J]. MOLECULAR PSYCHIATRY, 2016, 21 (03) : 437 - 443
  • [18] Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals
    Lee, James J.
    Wedow, Robbee
    Okbay, Aysu
    Kong, Edward
    Maghzian, Omeed
    Zacher, Meghan
    Tuan Anh Nguyen-Viet
    Bowers, Peter
    Sidorenko, Julia
    Linner, Richard Karlsson
    Fontana, Mark Alan
    Kundu, Tushar
    Lee, Chanwook
    Li, Hui
    Li, Ruoxi
    Royer, Rebecca
    Timshel, Pascal N.
    Walters, Raymond K.
    Willoughby, Emily A.
    Yengo, Loic
    Alver, Maris
    Bao, Yanchun
    Clark, David W.
    Day, Felix R.
    Furlotte, Nicholas A.
    Joshi, Peter K.
    Kemper, Kathryn E.
    Kleinman, Aaron
    Langenberg, Claudia
    Magi, Reedik
    Trampush, Joey W.
    Verma, Shefali Setia
    Wu, Yang
    Lam, Max
    Zhao, Jing Hua
    Zheng, Zhili
    Boardman, Jason D.
    Campbell, Harry
    Freese, Jeremy
    Harris, Kathleen Mullan
    Hayward, Caroline
    Herd, Pamela
    Kumari, Meena
    Lencz, Todd
    Luan, Jian'an
    Malhotra, Anil K.
    Metspalu, Andres
    Milani, Lili
    Ong, Ken K.
    Perry, John R. B.
    [J]. NATURE GENETICS, 2018, 50 (08) : 1112 - +
  • [19] Improving genetic prediction by leveraging genetic correlations among human diseases and traits
    Maier, Robert M.
    Zhu, Zhihong
    Lee, Sang Hong
    Trzaskowski, Maciej
    Ruderfer, Douglas M.
    Stahl, Eli A.
    Ripke, Stephan
    Wray, Naomi R.
    Yang, Jian
    Visscher, Peter M.
    Robinson, Matthew R.
    [J]. NATURE COMMUNICATIONS, 2018, 9
  • [20] Polygenic scores via penalized regression on summary statistics
    Mak, Timothy Shin Heng
    Porsch, Robert Milan
    Choi, Shing Wan
    Zhou, Xueya
    Sham, Pak Chung
    [J]. GENETIC EPIDEMIOLOGY, 2017, 41 (06) : 469 - 480