Long road to long-read assembly

被引：16
作者：
Marx, Vivien
机构：
[1] Nature Methods,
来源：
NATURE METHODS | 2021年 / 18卷 / 02期
关键词：
D O I：
10.1038/s41592-021-01057-y
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Genome assembly projects get a boost from high-accuracy long-read sequencing.
引用
收藏
页码：125 / 129
页数：5
相关论文
共 50 条
[31]   Long-Read Genome Assembly of Saccharomyces uvarum Strain CBS 7001 [J].
Chen, Jingxuan ;
Garfinkel, David J. ;
Bergman, Casey M. .
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2022, 11 (01)
[32]   Long-read sequencing and de novo assembly of the cynomolgus macaque genome [J].
Bai, Bing ;
Wang, Yi ;
Zhu, Ran ;
Zhang, Yaolei ;
Wang, Hong ;
Fan, Guangyi ;
Liu, Xin ;
Shi, Hong ;
Niu, Yuyu ;
Ji, Weizhi .
JOURNAL OF GENETICS AND GENOMICS, 2022, 49 (10) :975-978
[33]   GoldPolish-target: targeted long-read genome assembly polishing [J].
Zhang, Emily ;
Coombe, Lauren ;
Wong, Johnathan ;
Warren, Rene L. ;
Birol, Inanc .
BMC BIOINFORMATICS, 2025, 26 (01)
[34]   Quantitative assessment of LASSO probe assembly and long-read multiplexed cloning [J].
Shukor, Syukri ;
Tamayo, Alfred ;
Tosi, Lorenzo ;
Larman, H. Benjamin ;
Parekkadan, Biju .
BMC BIOTECHNOLOGY, 2019, 19 (1) :50
[35]   Coverage-preserving sparsification of overlap graphs for long-read assembly [J].
Jain, Chirag .
BIOINFORMATICS, 2023, 39 (03)
[36]   NextPolish: a fast and efficient genome polishing tool for long-read assembly [J].
Hu, Jiang ;
Fan, Junpeng ;
Sun, Zongyi ;
Liu, Shanlin .
BIOINFORMATICS, 2020, 36 (07) :2253-2255
[37]   metaFlye: scalable long-read metagenome assembly using repeat graphs [J].
Kolmogorov, Mikhail ;
Bickhart, Derek M. ;
Behsaz, Bahar ;
Gurevich, Alexey ;
Rayko, Mikhail ;
Shin, Sung Bong ;
Kuhn, Kristen ;
Yuan, Jeffrey ;
Polevikov, Evgeny ;
Smith, Timothy P. L. ;
Pevzner, Pavel A. .
NATURE METHODS, 2020, 17 (11) :1103-+
[38]   Long-read, assembly-based characterization of rearranged cancer karyotypes [J].
Keskus, Ayse ;
Ahmad, Tanveer ;
Donmez, Ataberk ;
Xie, Yi ;
Rodriguez, Isabel ;
Milano, Rose ;
Rossi, Nicole ;
Lou, Hong ;
Malik, Laksh ;
Billingsley, Kimberley ;
Blauwendraat, Cornelis ;
Dean, Michael ;
Kolmogorov, Mikhail .
CANCER RESEARCH, 2023, 83 (07)
[39]   Quantitative assessment of LASSO probe assembly and long-read multiplexed cloning [J].
Syukri Shukor ;
Alfred Tamayo ;
Lorenzo Tosi ;
H. Benjamin Larman ;
Biju Parekkadan .
BMC Biotechnology, 19
[40]   metaFlye: scalable long-read metagenome assembly using repeat graphs [J].
Mikhail Kolmogorov ;
Derek M. Bickhart ;
Bahar Behsaz ;
Alexey Gurevich ;
Mikhail Rayko ;
Sung Bong Shin ;
Kristen Kuhn ;
Jeffrey Yuan ;
Evgeny Polevikov ;
Timothy P. L. Smith ;
Pavel A. Pevzner .
Nature Methods, 2020, 17 :1103-1110
12345