Long road to long-read assembly

被引:17
作者
Marx, Vivien
机构
[1] Nature Methods,
关键词
D O I
10.1038/s41592-021-01057-y
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Genome assembly projects get a boost from high-accuracy long-read sequencing.
引用
收藏
页码:125 / 129
页数:5
相关论文
共 50 条
[1]   Long road to long-read assembly [J].
Vivien Marx .
Nature Methods, 2021, 18 :125-129
[2]   Democratizing long-read genome assembly [J].
Kirsche, Melanie ;
Schatz, Michael C. .
CELL SYSTEMS, 2021, 12 (10) :945-947
[3]   Long-read genotyping with SLANG (Simple Long-read loci Assembly of Nanopore data for Genotyping) [J].
Dorfner, Marco ;
Ott, Tankred ;
Ott, Philipp ;
Oberprieler, Christoph .
APPLICATIONS IN PLANT SCIENCES, 2022, 10 (03)
[4]   Long-read sequence and assembly of segmental duplications [J].
Mitchell R. Vollger ;
Philip C. Dishuck ;
Melanie Sorensen ;
AnneMarie E. Welch ;
Vy Dang ;
Max L. Dougherty ;
Tina A. Graves-Lindsay ;
Richard K. Wilson ;
Mark J. P. Chaisson ;
Evan E. Eichler .
Nature Methods, 2019, 16 :88-94
[5]   Long-read sequence and assembly of segmental duplications [J].
Vollger, Mitchell R. ;
Dishuck, Philip C. ;
Sorensen, Melanie ;
Welch, AnneMarie E. ;
Dang, Vy ;
Dougherty, Max L. ;
Graves-Lindsay, Tina A. ;
Wilson, Richard K. ;
Chaisson, Mark J. P. ;
Eichler, Evan E. .
NATURE METHODS, 2019, 16 (01) :88-+
[6]   Long-read sequence assembly of the gorilla genome [J].
Gordon, David ;
Huddleston, John ;
Chaisson, Mark J. P. ;
Hill, Christopher M. ;
Kronenberg, Zev N. ;
Munson, Katherine M. ;
Malig, Maika ;
Raja, Archana ;
Fiddes, Ian ;
Hillier, LaDeana W. ;
Dunn, Christopher ;
Baker, Carl ;
Armstrong, Joel ;
Diekhans, Mark ;
Paten, Benedict ;
Shendure, Jay ;
Wilson, Richard K. ;
Haussler, David ;
Chin, Chen-Shan ;
Eichler, Evan E. .
SCIENCE, 2016, 352 (6281)
[7]   Comparison and benchmark of structural variants detected from long read and long-read assembly [J].
Lin, Jiadong ;
Jia, Peng ;
Wang, Songbo ;
Kosters, Walter ;
Ye, Kai .
BRIEFINGS IN BIOINFORMATICS, 2023, 24 (04)
[8]   Plastid Genome Assembly Using Long-read data [J].
Zhou, Wenbin ;
Armijos, Carolina E. ;
Lee, Chaehee ;
Lu, Ruisen ;
Wang, Jeremy ;
Ruhlman, Tracey A. ;
Jansen, Robert K. ;
Jones, Alan M. ;
Jones, Corbin D. .
MOLECULAR ECOLOGY RESOURCES, 2023, 23 (06) :1442-1457
[9]   Long-read sequence assembly: a technical evaluation in barley [J].
Mascher, Martin ;
Wicker, Thomas ;
Jenkins, Jerry ;
Plott, Christopher ;
Lux, Thomas ;
Koh, Chu Shin ;
Ens, Jennifer ;
Gundlach, Heidrun ;
Boston, Lori B. ;
Tulpova, Zuzana ;
Holden, Samuel ;
Hernandez-Pinzon, Inmaculada ;
Scholz, Uwe ;
Mayer, Klaus F. X. ;
Spannagl, Manuel ;
Pozniak, Curtis J. ;
Sharpe, Andrew G. ;
Simkova, Hana ;
Moscou, Matthew J. ;
Grimwood, Jane ;
Schmutz, Jeremy ;
Stein, Nils .
PLANT CELL, 2021, 33 (06) :1888-1906
[10]   Improving the genome assembly of rabbits with long-read sequencing [J].
Bai, Yiqin ;
Lin, Weili ;
Xu, Jie ;
Song, Jun ;
Yang, Dongshan ;
Chen, Y. Eugene ;
Li, Lin ;
Li, Yixue ;
Wang, Zhen ;
Zhang, Jifeng .
GENOMICS, 2021, 113 (05) :3216-3223