Long road to long-read assembly

被引:15
|
作者
Marx, Vivien
机构
[1] Nature Methods,
关键词
D O I
10.1038/s41592-021-01057-y
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Genome assembly projects get a boost from high-accuracy long-read sequencing.
引用
收藏
页码:125 / 129
页数:5
相关论文
共 50 条
  • [1] Long road to long-read assembly
    Vivien Marx
    Nature Methods, 2021, 18 : 125 - 129
  • [2] Democratizing long-read genome assembly
    Kirsche, Melanie
    Schatz, Michael C.
    CELL SYSTEMS, 2021, 12 (10) : 945 - 947
  • [3] Long-read genotyping with SLANG (Simple Long-read loci Assembly of Nanopore data for Genotyping)
    Dorfner, Marco
    Ott, Tankred
    Ott, Philipp
    Oberprieler, Christoph
    APPLICATIONS IN PLANT SCIENCES, 2022, 10 (03):
  • [4] Long-read sequence and assembly of segmental duplications
    Vollger, Mitchell R.
    Dishuck, Philip C.
    Sorensen, Melanie
    Welch, AnneMarie E.
    Dang, Vy
    Dougherty, Max L.
    Graves-Lindsay, Tina A.
    Wilson, Richard K.
    Chaisson, Mark J. P.
    Eichler, Evan E.
    NATURE METHODS, 2019, 16 (01) : 88 - +
  • [5] Long-read sequence assembly of the gorilla genome
    Gordon, David
    Huddleston, John
    Chaisson, Mark J. P.
    Hill, Christopher M.
    Kronenberg, Zev N.
    Munson, Katherine M.
    Malig, Maika
    Raja, Archana
    Fiddes, Ian
    Hillier, LaDeana W.
    Dunn, Christopher
    Baker, Carl
    Armstrong, Joel
    Diekhans, Mark
    Paten, Benedict
    Shendure, Jay
    Wilson, Richard K.
    Haussler, David
    Chin, Chen-Shan
    Eichler, Evan E.
    SCIENCE, 2016, 352 (6281)
  • [6] Long-read sequence and assembly of segmental duplications
    Mitchell R. Vollger
    Philip C. Dishuck
    Melanie Sorensen
    AnneMarie E. Welch
    Vy Dang
    Max L. Dougherty
    Tina A. Graves-Lindsay
    Richard K. Wilson
    Mark J. P. Chaisson
    Evan E. Eichler
    Nature Methods, 2019, 16 : 88 - 94
  • [7] Comparison and benchmark of structural variants detected from long read and long-read assembly
    Lin, Jiadong
    Jia, Peng
    Wang, Songbo
    Kosters, Walter
    Ye, Kai
    BRIEFINGS IN BIOINFORMATICS, 2023, 24 (04)
  • [8] BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper
    Guidi, Giulia
    Ellis, Marquita
    Rokhsar, Daniel
    Yelick, Katherine
    Buluc, Aydin
    PROCEEDINGS OF THE 2021 SIAM CONFERENCE ON APPLIED AND COMPUTATIONAL DISCRETE ALGORITHMS, ACDA21, 2021, : 123 - 134
  • [9] Improving the genome assembly of rabbits with long-read sequencing
    Bai, Yiqin
    Lin, Weili
    Xu, Jie
    Song, Jun
    Yang, Dongshan
    Chen, Y. Eugene
    Li, Lin
    Li, Yixue
    Wang, Zhen
    Zhang, Jifeng
    GENOMICS, 2021, 113 (05) : 3216 - 3223
  • [10] Plastid Genome Assembly Using Long-read data
    Zhou, Wenbin
    Armijos, Carolina E.
    Lee, Chaehee
    Lu, Ruisen
    Wang, Jeremy
    Ruhlman, Tracey A.
    Jansen, Robert K.
    Jones, Alan M.
    Jones, Corbin D.
    MOLECULAR ECOLOGY RESOURCES, 2023, 23 (06) : 1442 - 1457