Identification of UV-B-induced microRNAs in wheat

被引:49
作者
Wang, B.
Sun, Y. F.
Song, N.
Wang, X. J.
Feng, H.
Huang, L. L.
Kang, Z. S. [1 ]
机构
[1] Northwest A&F Univ, Coll Plant Protect, Yangling, Shaanxi, Peoples R China
关键词
Wheat; MicroRNA; Northern blot; UV-B radiation; SMALL RNAS; COMPUTATIONAL IDENTIFICATION; TARGET GENES; STRESS; ARABIDOPSIS; BIOGENESIS; INDUCTION; INFECTION; GENOMICS; FAMILY;
D O I
10.4238/2013.October.7.7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
MicroRNAs (miRNAs) play critical roles in post-transcriptional gene regulation and act as important endogenous regulators to various stressors. Ultraviolet-B (UV-B) radiation is a major factor influencing crop growth and development. In this study, we isolated a novel wheat miRNA, named Tae-miR6000, and confirmed its expression diversity after UV-B treatments. Additionally, using the Northern blotting technique, we found that six miRNAs were highly responsive to UV-B stress in wheat. Of these six miRNAs, miR159, miR167a, and miR171 were significantly upregulated, and the remaining three miRNAs were downregulated, at different time points after UV-B treatment. This result indicates that miRNAs may be involved in the regulation of targets after induction by UV-B stress. Furthermore, promoter analysis of the UV-B-responsive miRNA genes revealed some light-relevant cis-elements, such as the I-box and G-box. Taken together, the results of this study suggest that wheat miRNAs play important roles in the response to UV-B stress.
引用
收藏
页码:4213 / 4221
页数:9
相关论文
共 33 条
[1]   A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance [J].
Agarwal, Manu ;
Hao, Yujin ;
Kapoor, Avnish ;
Dong, Chun-Hai ;
Fujii, Hiroaki ;
Zheng, Xianwu ;
Zhu, Jian-Kang .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (49) :37636-37645
[2]   Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family [J].
Allen, Robert S. ;
Li, Junyan ;
Stahle, Melissa I. ;
Dubroue, Aurelie ;
Gubler, Frank ;
Millar, Anthony A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (41) :16371-16376
[3]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[4]   Infection and coaccumulation of tobacco mosaic virus proteins alter microRNA levels, correlating with symptom and plant development [J].
Bazzini, A. A. ;
Hopp, H. E. ;
Beachy, R. N. ;
Asurmendi, S. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (29) :12157-12162
[5]   Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of MicroRNA in host gene expression [J].
Chen, J ;
Li, WX ;
Xie, DX ;
Peng, JR ;
Ding, SW .
PLANT CELL, 2004, 16 (05) :1302-1313
[6]   microRNA biogenesis and function in plants [J].
Chen, XM .
FEBS LETTERS, 2005, 579 (26) :5923-5931
[7]   Comparative Genomics in the grass family: Molecular characterization of grass genome structure and evolution [J].
Feuillet, C ;
Keller, B .
ANNALS OF BOTANY, 2002, 89 (01) :3-10
[8]   Computational identification of microRNAs and their targets in wheat (Triticum aestivum L.) [J].
Han YouSheng ;
Luan FuLei ;
Zhu HongLiang ;
Shao Yi ;
Chen AnJun ;
Lu ChengWen ;
Luo YunBo ;
Zhu BenZhong .
SCIENCE IN CHINA SERIES C-LIFE SCIENCES, 2009, 52 (11) :1091-1100
[9]   Effects of low UV-B doses on the accumulation of UV-B absorbing compounds and total phenolics and carbohydrate metabolism in the peel of harvested lemons [J].
Interdonato, Roque ;
Rosa, Mariana ;
Nieva, Cecilia B. ;
Gonzalez, Juan A. ;
Hilal, Mirna ;
Prado, Fernando E. .
ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 2011, 70 (2-3) :204-211
[10]   UV-B-responsive microRNAs in Populus tremula [J].
Jia, Xiaoyun ;
Ren, Ligang ;
Chen, Qi-Jun ;
Li, Runzhi ;
Tang, Guiliang .
JOURNAL OF PLANT PHYSIOLOGY, 2009, 166 (18) :2046-2057