A guide to large-scale RNA sample preparation

被引:66
作者
Baronti, Lorenzo [1 ]
Karlsson, Hampus [1 ]
Marusic, Maja [1 ]
Petzold, Katja [1 ]
机构
[1] Karolinska Inst, Dept Med Biochem & Biophys, Scheeles Vag 2, S-17177 Stockholm, Sweden
关键词
RNA; Sample preparation; In vitro transcription; Chemical synthesis; Preparative high-performance liquid chromatography; Structural biology; RECOMBINANT RNA; IN-VITRO; SINGLE-MOLECULE; EXTRACELLULAR PRODUCTION; SECONDARY STRUCTURE; CHEMICAL-SYNTHESIS; PURIFICATION; CHROMATOGRAPHY; RIBOSOME; VIVO;
D O I
10.1007/s00216-018-0943-8
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
RNA is becoming more important as an increasing number of functions, both regulatory and enzymatic, are being discovered on a daily basis. As the RNA boom has just begun, most techniques are still in development and changes occur frequently. To understand RNA functions, revealing the structure of RNA is of utmost importance, which requires sample preparation. We review the latest methods to produce and purify a variation of RNA molecules for different purposes with the main focus on structural biology and biophysics. We present a guide aimed at identifying the most suitable method for your RNA and your biological question and highlighting the advantages of different methods.
引用
收藏
页码:3239 / 3252
页数:14
相关论文
共 129 条
[1]   RNA synthesis and purification for structural studies [J].
Ahmed, Yasar Luqman ;
Ficner, Ralf .
RNA BIOLOGY, 2014, 11 (05) :427-432
[2]  
Anderson AC, 1996, RNA, V2, P110
[3]  
Andreas Juen M., 2016, Angew Chem, V128, P12187, DOI [10.1002/ange.201605870, DOI 10.1002/ANGE.201605870]
[4]   Enzyme-mediated tagging of RNA [J].
Anhaeuser, Lea ;
Rentmeistert, Andrea .
CURRENT OPINION IN BIOTECHNOLOGY, 2017, 48 :69-76
[5]   A METHOD FOR THE PURIFICATION OF OLIGONUCLEOTIDES CONTAINING STRONG INTRAMOLECULAR OR INTERMOLECULAR INTERACTIONS BY REVERSED-PHASE HIGH-PERFORMANCE LIQUID-CHROMATOGRAPHY [J].
ARGHAVANI, MB ;
ROMANO, LJ .
ANALYTICAL BIOCHEMISTRY, 1995, 231 (01) :201-209
[6]   Improved native affinity purification of RNA [J].
Batey, Robert T. ;
Kieft, Jeffrey S. .
RNA, 2007, 13 (08) :1384-1389
[7]   Advances in methods for native expression and purification of RNA for structural studies [J].
Batey, Robert T. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2014, 26 :1-8
[8]  
Beckert B, 2010, RNA, P29
[9]  
Bellon L, 2001, CURRENT PROTOCOLS NU, V1:3.6.1-3.6.13
[10]   Mechanistic Debris Generated by Twister Ribozymes [J].
Breaker, Ronald R. .
ACS CHEMICAL BIOLOGY, 2017, 12 (04) :886-891