Response of Fungal Communities and Co-occurrence Network Patterns to Compost Amendment in Black Soil of Northeast China

被引:66
作者
Yang, Wei [1 ]
Jing, Xuyuan [2 ]
Guan, Yupeng [1 ]
Zhai, Cheng [1 ]
Wang, Tao [1 ]
Shi, Dengyu [1 ]
Sun, Wenpeng [3 ]
Gu, Siyu [1 ]
机构
[1] Northeast Agr Univ, Coll Resources & Environm, Harbin, Heilongjiang, Peoples R China
[2] Heilongjiang Acad Land Reclamat Sci, Inst Crop Res, Jiamusi, Peoples R China
[3] Northeast Agr Univ, Inst New Rural Dev, Harbin, Heilongjiang, Peoples R China
关键词
compost addition; growth stage; soybean; fungi; Miseq sequencing; network analysis; DIFFERENT FERTILIZATION REGIMES; LONG-TERM FERTILIZATION; MICROBIAL COMMUNITY; BACTERIAL; MANURE; DECOMPOSITION; RESILIENCE; REDUNDANCY; DIVERSITY; INCREASES;
D O I
10.3389/fmicb.2019.01562
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
In agroecosystems, fungi not only attract attention as crop pathogens, but also play crucial roles in nutrient cycling as decomposers and arbuscular mycorrhizal mutualists. Consequently soil fungi strongly influence agroecosystem function, and are conspicuously influenced by agricultural practices. We examined the effects of four compost rates (0, 11.25, 22.5, and 45 Mg ha(-1)) on soil fungal community compositions and network patterns in soybean at seedling, flowering, and mature stage in a field experiment in black soil of Northeast China. Miseq sequencing was used to characterize the soil fungal community. Our results revealed that soil fungal richness was unaffected by compost addition, while soil fungal community composition was significantly influenced by compost addition across the growing season. Among the combined "top 20" fungal OTUs, 15 OTUs positively responded to compost addition, while 10 negatively responded. The abundance of predicted pathotroph was greatly decreased by the 45 Mg ha(-1) compost addition. Network analysis indicated that the fungal networks in compost amended soils were more complex and harbored more positive links than the control. Fungal network harbored more positive links among saprotroph-saprotroph and saprotroph-symbiotroph in moderate level of compost amended soils than other networks. In conclusion, this study revealed that compost addition impacted positively both the soil fungal communities and network patterns within a single growing season. Thus, compost addition could be a good practice to enhance the soil fungal community and function and ultimately soil health and quality.
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页数:11
相关论文
共 56 条
[1]   Resistance, resilience, and redundancy in microbial communities [J].
Allison, Steven D. ;
Martiny, Jennifer B. H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 :11512-11519
[2]   Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil [J].
Banerjee, Samiran ;
Kirkby, Clive A. ;
Schmutter, Dione ;
Bissett, Andrew ;
Kirkegaard, John A. ;
Richardson, Alan E. .
SOIL BIOLOGY & BIOCHEMISTRY, 2016, 97 :188-198
[3]   The role of microbial community in the decomposition of leaf litter and deadwood [J].
Bani, Alessia ;
Pioli, Silvia ;
Ventura, Maurizio ;
Panzacchi, Pietro ;
Borruso, Luigimaria ;
Tognetti, Roberto ;
Tonon, Giustino ;
Brusetti, Lorenzo .
APPLIED SOIL ECOLOGY, 2018, 126 :75-84
[4]  
Bastian M., Gephi: an Open Source Software for Exploring and Manipulating Networks, DOI 10.1609/icwsm.v3i1.13937
[5]   Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data [J].
Bengtsson-Palme, Johan ;
Ryberg, Martin ;
Hartmann, Martin ;
Branco, Sara ;
Wang, Zheng ;
Godhe, Anna ;
De Wit, Pierre ;
Sanchez-Garcia, Marisol ;
Ebersberger, Ingo ;
de Sousa, Filipe ;
Amend, Anthony S. ;
Jumpponen, Ari ;
Unterseher, Martin ;
Kristiansson, Erik ;
Abarenkov, Kessy ;
Bertrand, Yann J. K. ;
Sanli, Kemal ;
Eriksson, K. Martin ;
Vik, Unni ;
Veldre, Vilmar ;
Nilsson, R. Henrik .
METHODS IN ECOLOGY AND EVOLUTION, 2013, 4 (10) :914-919
[6]   Organic farming induces changes in soil microbiota that affect agro-ecosystem functions [J].
Bonanomi, Giuliano ;
De Filippis, Francesca ;
Cesarano, Gaspare ;
La Storia, Antonietta ;
Ercolini, Danilo ;
Scala, Felice .
SOIL BIOLOGY & BIOCHEMISTRY, 2016, 103 :327-336
[7]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[8]   Decipinin A and decipienolides A and B:: New bioactive metabolites from the coprophilous fungus Podospora decipiens [J].
Che, YS ;
Gloer, JB ;
Koster, B ;
Malloch, D .
JOURNAL OF NATURAL PRODUCTS, 2002, 65 (06) :916-919
[9]   Host preference, niches and fungal diversity [J].
Dickie, Ian A. .
NEW PHYTOLOGIST, 2007, 174 (02) :230-233
[10]   Influence of inorganic fertilizer and organic manure application on fungal communities in a long-term field experiment of Chinese Mollisols [J].
Ding, Jianli ;
Jiang, Xin ;
Guan, Dawei ;
Zhao, Baisuo ;
Ma, Mingchao ;
Zhou, Baoku ;
Cao, Fengming ;
Yang, Xiaohong ;
Li, Li ;
Li, Jun .
APPLIED SOIL ECOLOGY, 2017, 111 :114-122