Mendelian randomisation with coarsened exposures

被引:20
作者
Tudball, Matthew J. [1 ,2 ]
Bowden, Jack [1 ,2 ,3 ]
Hughes, Rachael A. [1 ,2 ]
Ly, Amanda [1 ,2 ]
Munafo, Marcus R. [1 ,2 ,4 ]
Tilling, Kate [1 ,2 ]
Zhao, Qingyuan [5 ]
Davey Smith, George [1 ,2 ]
机构
[1] Univ Bristol, MRC Integrat Epidemiol Unit, Oakfield House, Bristol BS8 2BN, Avon, England
[2] Univ Bristol, Bristol Med Sch, Populat Hlth Sci, Bristol, Avon, England
[3] Univ Exeter, Coll Med & Hlth, Exeter, Devon, England
[4] Univ Bristol, Sch Psychol Sci, Bristol, Avon, England
[5] Univ Cambridge, Dept Pure Math & Math Stat, Cambridge, England
基金
英国医学研究理事会; 英国惠康基金;
关键词
biomarkers; latent variable modelling; Mendelian randomisation analysis; sensitivity analysis; BODY-MASS INDEX; IDENTIFICATION; INHERITANCE; ASSOCIATION; LIABILITY; INSIGHTS; OBESITY; DISEASE; MODEL;
D O I
10.1002/gepi.22376
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A key assumption in Mendelian randomisation is that the relationship between the genetic instruments and the outcome is fully mediated by the exposure, known as the exclusion restriction assumption. However, in epidemiological studies, the exposure is often a coarsened approximation to some latent continuous trait. For example, latent liability to schizophrenia can be thought of as underlying the binary diagnosis measure. Genetically driven variation in the outcome can exist within categories of the exposure measurement, thus violating this assumption. We propose a framework to clarify this violation, deriving a simple expression for the resulting bias and showing that it may inflate or deflate effect estimates but will not reverse their sign. We then characterise a set of assumptions and a straight-forward method for estimating the effect of SD increases in the latent exposure. Our method relies on a sensitivity parameter which can be interpreted as the genetic variance of the latent exposure. We show that this method can be applied in both the one-sample and two-sample settings. We conclude by demonstrating our method in an applied example and reanalysing two papers which are likely to suffer from this type of bias, allowing meaningful interpretation of their effect sizes.
引用
收藏
页码:338 / 350
页数:13
相关论文
共 31 条
[1]   2-STAGE LEAST-SQUARES ESTIMATION OF AVERAGE CAUSAL EFFECTS IN MODELS WITH VARIABLE TREATMENT INTENSITY [J].
ANGRIST, JD ;
IMBENS, GW .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 1995, 90 (430) :431-442
[2]   Mendelian randomization with a binary exposure variable: interpretation and presentation of causal estimates [J].
Burgess, Stephen ;
Labrecque, Jeremy A. .
EUROPEAN JOURNAL OF EPIDEMIOLOGY, 2018, 33 (10) :947-952
[3]   Using published data in Mendelian randomization: a blueprint for efficient identification of causal risk factors [J].
Burgess, Stephen ;
Scott, Robert A. ;
Timpson, Nicholas J. ;
Smith, George Davey ;
Thompson, Simon G. .
EUROPEAN JOURNAL OF EPIDEMIOLOGY, 2015, 30 (07) :543-552
[4]   Mendelian Randomization Analysis With Multiple Genetic Variants Using Summarized Data [J].
Burgess, Stephen ;
Butterworth, Adam ;
Thompson, Simon G. .
GENETIC EPIDEMIOLOGY, 2013, 37 (07) :658-665
[5]   Patient and carer perceived barriers to early presentation and diagnosis of lung cancer: a systematic review [J].
Cassim, Shemana ;
Chepulis, Lynne ;
Keenan, Rawiri ;
Kidd, Jacquie ;
Firth, Melissa ;
Lawrenson, Ross .
BMC CANCER, 2019, 19 (1)
[6]   MULTIFACTORIAL MODEL FOR INHERITANCE OF LIABILITY TO DISEASE AND ITS IMPLICATIONS FOR RELATIVES AT RISK [J].
CURNOW, RN .
BIOMETRICS, 1972, 28 (04) :931-946
[7]   Physicians' prescribing preferences were a potential instrument for patients' actual prescriptions of antidepressants [J].
Davies, Neil M. ;
Gunnell, David ;
Thomas, Kyla H. ;
Metcalfe, Chris ;
Windmeijer, Frank ;
Martin, Richard M. .
JOURNAL OF CLINICAL EPIDEMIOLOGY, 2013, 66 (12) :1386-1396
[9]   The MR-Base platform supports systematic causal inference across the human phenome [J].
Hemani, Gibran ;
Zhengn, Jie ;
Elsworth, Benjamin ;
Wade, Kaitlin H. ;
Haberland, Valeriia ;
Baird, Denis ;
Laurin, Charles ;
Burgess, Stephen ;
Bowden, Jack ;
Langdon, Ryan ;
Tan, Vanessa Y. ;
Yarmolinsky, James ;
Shihab, Hashem A. ;
Timpson, Nicholas J. ;
Evans, David M. ;
Relton, Caroline ;
Martin, Richard M. ;
Smith, George Davey ;
Gaunt, Tom R. ;
Haycock, Philip C. .
ELIFE, 2018, 7
[10]   SEMIPARAMETRIC LEAST-SQUARES (SLS) AND WEIGHTED SLS ESTIMATION OF SINGLE-INDEX MODELS [J].
ICHIMURA, H .
JOURNAL OF ECONOMETRICS, 1993, 58 (1-2) :71-120