Iterative minimization algorithm for efficient calculations of transition states
被引:17
作者:
Gao, Weiguo
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机构:
Fudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Fudan Univ, MOE Key Lab Computat Phys Sci, Shanghai 200433, Peoples R ChinaFudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Gao, Weiguo
[1
,2
]
Leng, Jing
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机构:
Fudan Univ, Sch Math Sci, Shanghai 200433, Peoples R ChinaFudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Leng, Jing
[1
]
Zhou, Xiang
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机构:
City Univ Hong Kong, Dept Math, Tat Chee Ave, Kowloon, Hong Kong, Peoples R ChinaFudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Zhou, Xiang
[3
]
机构:
[1] Fudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
[2] Fudan Univ, MOE Key Lab Computat Phys Sci, Shanghai 200433, Peoples R China
[3] City Univ Hong Kong, Dept Math, Tat Chee Ave, Kowloon, Hong Kong, Peoples R China
This paper presents an efficient algorithmic implementation of the iterative minimization formulation (IMF) for fast local search of transition state on potential energy surface. The IMF is a second order iterative scheme providing a general and rigorous description for the eigenvector-following (min-mode following) methodology. We offer a unified interpretation in numerics via the IMF for existing eigenvector-following methods, such as the gentlest ascent dynamics, the dimer method and many other variants. We then propose our new algorithm based on the IMF. The main feature of our algorithm is that the translation step is replaced by solving an optimization subproblem associated with an auxiliary objective function which is constructed from the min-mode information. We show that using an efficient scheme for the inexact solver and enforcing an adaptive stopping criterion for this subproblem, the overall computational cost will be effectively reduced and a superlinear rate between the accuracy and the computational cost can be achieved. A series of numerical tests demonstrate the significant improvement in the computational efficiency for the new algorithm. (C) 2015 Elsevier Inc. All rights reserved.
机构:
Univ Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
INRIA Rocquencourt, MICMAC Team Project, F-78153 Le Chesnay, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
Cances, E.
Legoll, F.
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h-index: 0
机构:
INRIA Rocquencourt, MICMAC Team Project, F-78153 Le Chesnay, France
Univ Paris Est, LAMI, Ecole Ponts, Inst Navier, F-77455 Marne La Vallee 2, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
Legoll, F.
Marinica, M. -C.
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机构:
CEA, DEN, Serv Rech Met Phys, F-91191 Gif Sur Yvette, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
Marinica, M. -C.
Minoukadeh, K.
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h-index: 0
机构:
Univ Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
INRIA Rocquencourt, MICMAC Team Project, F-78153 Le Chesnay, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
Minoukadeh, K.
Willaime, F.
论文数: 0引用数: 0
h-index: 0
机构:
CEA, DEN, Serv Rech Met Phys, F-91191 Gif Sur Yvette, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
机构:
City Univ Hong Kong, Dept Math, Kowloon Tong, Hong Kong, Peoples R China
City Univ Hong Kong, Liu Bie Ju Ctr Math Sci, Kowloon Tong, Hong Kong, Peoples R ChinaCity Univ Hong Kong, Dept Math, Kowloon Tong, Hong Kong, Peoples R China
Dai, Hui-Hui
Wang, Fan-Fan
论文数: 0引用数: 0
h-index: 0
机构:
E China Univ Sci & Technol, Dept Math, Shanghai 200237, Peoples R ChinaCity Univ Hong Kong, Dept Math, Kowloon Tong, Hong Kong, Peoples R China
机构:
Fudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Fudan Univ, MOE Key Lab Computat Phys Sci, Shanghai 200433, Peoples R ChinaFudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Gao, Weiguo
Leng, Jing
论文数: 0引用数: 0
h-index: 0
机构:
Fudan Univ, Sch Math Sci, Shanghai 200433, Peoples R ChinaFudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Leng, Jing
Zhou, Xiang
论文数: 0引用数: 0
h-index: 0
机构:
City Univ Hong Kong, Dept Math, Kowloon, Hong Kong, Peoples R ChinaFudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
机构:
Univ Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
INRIA Rocquencourt, MICMAC Team Project, F-78153 Le Chesnay, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
Cances, E.
Legoll, F.
论文数: 0引用数: 0
h-index: 0
机构:
INRIA Rocquencourt, MICMAC Team Project, F-78153 Le Chesnay, France
Univ Paris Est, LAMI, Ecole Ponts, Inst Navier, F-77455 Marne La Vallee 2, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
Legoll, F.
Marinica, M. -C.
论文数: 0引用数: 0
h-index: 0
机构:
CEA, DEN, Serv Rech Met Phys, F-91191 Gif Sur Yvette, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
Marinica, M. -C.
Minoukadeh, K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
INRIA Rocquencourt, MICMAC Team Project, F-78153 Le Chesnay, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
Minoukadeh, K.
Willaime, F.
论文数: 0引用数: 0
h-index: 0
机构:
CEA, DEN, Serv Rech Met Phys, F-91191 Gif Sur Yvette, FranceUniv Paris Est, CERMICS, Ecole Ponts, F-77455 Marne La Vallee 2, France
机构:
City Univ Hong Kong, Dept Math, Kowloon Tong, Hong Kong, Peoples R China
City Univ Hong Kong, Liu Bie Ju Ctr Math Sci, Kowloon Tong, Hong Kong, Peoples R ChinaCity Univ Hong Kong, Dept Math, Kowloon Tong, Hong Kong, Peoples R China
Dai, Hui-Hui
Wang, Fan-Fan
论文数: 0引用数: 0
h-index: 0
机构:
E China Univ Sci & Technol, Dept Math, Shanghai 200237, Peoples R ChinaCity Univ Hong Kong, Dept Math, Kowloon Tong, Hong Kong, Peoples R China
机构:
Fudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Fudan Univ, MOE Key Lab Computat Phys Sci, Shanghai 200433, Peoples R ChinaFudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Gao, Weiguo
Leng, Jing
论文数: 0引用数: 0
h-index: 0
机构:
Fudan Univ, Sch Math Sci, Shanghai 200433, Peoples R ChinaFudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China
Leng, Jing
Zhou, Xiang
论文数: 0引用数: 0
h-index: 0
机构:
City Univ Hong Kong, Dept Math, Kowloon, Hong Kong, Peoples R ChinaFudan Univ, Sch Math Sci, Shanghai 200433, Peoples R China