Application of a Proteolysis/Mass Spectrometry Method for Investigating the Effects of Inhibitors on Hydroxylase Structure

被引:41
作者
Stubbs, Christopher J. [1 ,2 ]
Loenarz, Christoph [1 ,2 ]
Mecinovic, Jasmin [1 ,2 ]
Yeoh, Kar Kheng [1 ,2 ]
Hindley, Nicola [1 ,2 ]
Lienard, Benoit M. [1 ,2 ]
Sobott, Frank
Schofield, Christopher J. [1 ,2 ]
Flashman, Emily [1 ,2 ]
机构
[1] Univ Oxford, Dept Chem, Oxford OX1 3TA, England
[2] Univ Oxford, Oxford Ctr Integrat Syst Biol, Oxford OX1 3TA, England
基金
英国生物技术与生命科学研究理事会; 英国惠康基金;
关键词
HYPOXIA-INDUCIBLE FACTOR; PROLYL HYDROXYLASE; LIMITED PROTEOLYSIS; MASS-SPECTROMETRY; FACTOR HIF; CRYSTAL-STRUCTURE; BINDING-SITE; FACTOR-I; 2-OXOGLUTARATE; IDENTIFICATION;
D O I
10.1021/jm900285r
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Limited proteolysis coupled to matrix-assisted laser desorption/ionization (MALDI) mass spectrometric analyses can be used to screen for compounds that alter protein structure by monitoring stabilizing/destabilizing effects with respect to the rate and nature of proteolysis. When applied to prolyl hydroxylase 2, a hey enzyme involved in human oxygen sensing. the method efficiently revealed differential effects on proteolytic stability for structurally similar compounds and for different substrates.
引用
收藏
页码:2799 / 2805
页数:7
相关论文
共 41 条
  • [1] Dynamic states of the DNA repair enzyme AlkB regulate product release
    Bleijlevens, Boris
    Shivarattan, Tara
    Flashman, Emily
    Yang, Yi
    Simpson, Pete J.
    Koivisto, Pertti
    Sedgwick, Barbara
    Schofield, Christopher J.
    Matthews, Steve J.
    [J]. EMBO REPORTS, 2008, 9 (09) : 872 - 877
  • [2] Coordinate regulation of the oxygen-dependent degradation domains of hypoxia-inducible factor 1α
    Chan, DA
    Sutphin, PD
    Yen, SE
    Giaccia, AJ
    [J]. MOLECULAR AND CELLULAR BIOLOGY, 2005, 25 (15) : 6415 - 6426
  • [3] The human oxygen sensing machinery and its manipulation
    Chowdhury, Rasheduzzaman
    Hardy, Adam
    Schofield, Christopher J.
    [J]. CHEMICAL SOCIETY REVIEWS, 2008, 37 (07) : 1308 - 1319
  • [4] Structural studies on 2-oxoglutarate oxygenases and related double-stranded β-helix fold proteins
    Clifton, Ian J.
    McDonough, Michael A.
    Ehrismann, Dominic
    Kershaw, Nadia J.
    Granatino, Nicolas
    Schofield, Christopher J.
    [J]. JOURNAL OF INORGANIC BIOCHEMISTRY, 2006, 100 (04) : 644 - 669
  • [5] PROBING THE SOLUTION STRUCTURE OF THE DNA-BINDING PROTEIN MAX BY A COMBINATION OF PROTEOLYSIS AND MASS-SPECTROMETRY
    COHEN, SL
    FERREDAMARE, AR
    BURLEY, SK
    CHAIT, BT
    [J]. PROTEIN SCIENCE, 1995, 4 (06) : 1088 - 1099
  • [6] Kinetic characterization and identification of a novel inhibitor of hypoxia-inducible factor prolyl hydroxylase 2 using a time-resolved fluorescence resonance energy transfer-based assay technology
    Dao, Jennifer H.
    Kurzeja, Robert J. M.
    Morachis, Jose M.
    Veith, Henrike
    Lewis, Jeffery
    Yu, Violeta
    Tegley, Christopher M.
    Tagari, Philip
    [J]. ANALYTICAL BIOCHEMISTRY, 2009, 384 (02) : 213 - 223
  • [7] Structure of factor-inhibiting hypoxia-inducible factor (HIF) reveals mechanism of oxidative modification of HIF-1α
    Elkins, JM
    Hewitson, KS
    McNeill, LA
    Seibel, JF
    Schlemminger, I
    Pugh, CW
    Ratcliffe, PJ
    Schofield, CJ
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (03) : 1802 - 1806
  • [8] C-elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation
    Epstein, ACR
    Gleadle, JM
    McNeill, LA
    Hewitson, KS
    O'Rourke, J
    Mole, DR
    Mukherji, M
    Metzen, E
    Wilson, MI
    Dhanda, A
    Tian, YM
    Masson, N
    Hamilton, DL
    Jaakkola, P
    Barstead, R
    Hodgkin, J
    Maxwell, PH
    Pugh, CW
    Schofield, CJ
    Ratcliffe, PJ
    [J]. CELL, 2001, 107 (01) : 43 - 54
  • [9] Kinetic rationale for selectivity toward N- and C-terminal oxygen-dependent degradation domain substrates mediated by a loop region of hypoxia-inducible factor prolyl hydroxylases
    Flashman, Emily
    Bagg, Eleanor A. L.
    Chowdhury, Rasheduzzaman
    Mecinovic, Jasmin
    Loenarz, Christoph
    McDonough, Michael A.
    Hewitson, Kirsty S.
    Schofield, Christopher J.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2008, 283 (07) : 3808 - 3815
  • [10] Fontana A, 2004, ACTA BIOCHIM POL, V51, P299