RadonPy: automated physical property calculation using all-atom classical molecular dynamics simulations for polymer informatics

被引:50
作者
Hayashi, Yoshihiro [1 ,2 ]
Shiomi, Junichiro [1 ,2 ,3 ]
Morikawa, Junko [1 ,4 ]
Yoshida, Ryo [1 ,5 ,6 ]
机构
[1] Res Org Informat & Syst, Inst Stat Math ISM, 10-3 Midori Cho, Tachikawa, Tokyo 1908562, Japan
[2] Univ Tokyo, Dept Mech Engn, Bunkyo Ku, 7-3-1 Hongo, Tokyo 1138656, Japan
[3] Univ Tokyo, Inst Engn Innovat, Bunkyo Ku, 2-11 Yayoi, Tokyo 1130032, Japan
[4] Tokyo Inst Technol, Sch Mat & Chem Technol, Dept Mat Sci & Engn, Meguro Ku, 2-12-1 Ookayama, Tokyo 1528552, Japan
[5] Natl Inst Mat Sci NIMS, Res & Serv Div Mat Data & Integrated Syst MaDIS, 1-2-1 Sengen, Tsukuba, Ibaraki 3050047, Japan
[6] Grad Univ Adv Studies SOKENDAI, Sch Multidisciplinary Sci, Dept Stat Sci, 10-3 Midori Cho, Tachikawa, Tokyo 1908562, Japan
基金
日本学术振兴会;
关键词
ORBITAL METHODS; BASIS-SET; THERMAL-CONDUCTIVITY; ELEMENTS; DENSITY;
D O I
10.1038/s41524-022-00906-4
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The spread of data-driven materials research has increased the need for systematically designed materials property databases. However, the development of polymer databases has lagged far behind other material systems. We present RadonPy, an open-source library that can automate the complete process of all-atom classical molecular dynamics (MD) simulations applicable to a wide variety of polymeric materials. Herein, 15 different properties were calculated for more than 1000 amorphous polymers. The MD-calculated properties were systematically compared with experimental data to validate the calculation conditions; the bias and variance in the MD-calculated properties were successfully calibrated by a machine learning technique. During the high-throughput data production, we identified eight amorphous polymers with extremely high thermal conductivity (>0.4 W center dot m(-1) center dot K-1) and their underlying mechanisms. Similar to the advancement of materials informatics since the advent of computational property databases for inorganic crystals, database construction using RadonPy will promote the development of polymer informatics.
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页数:15
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