Isolation of salinity tolerant genes from the mangrove plant, Bruguiera cylindrica by using suppression subtractive hybridization (SSH) and bacterial functional screening

被引:29
作者
Wong, Yeen-Yee
Ho, Chai-Ling [1 ]
Nguyen, Phuoc Dang
Teo, Swee-Sen
Harikrishna, Jennifer Ann
Rahim, Raha Abdul
Wong, Michael C. V. L.
机构
[1] Univ Pertanian Malaysia, Fac Biotechnol & Biomol Sci, Serdang 43400, Selangor, Malaysia
[2] MUST, Unit GL33, Petaling Jaya 47301, Selangor, Malaysia
[3] Univ Malaysia Sabah, Biotechnol Res Inst, Kota Kinabalu 88999, Sabah, Malaysia
关键词
mangrove; bacterial functional screening; Bruguiera cylindrica; salinity tolerance; sequence analysis; suppression subtractive hybridization (SSH);
D O I
10.1016/j.aquabot.2006.09.009
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
In this study, we have identified and isolated 126 salinity tolerant cDNAs from the root of a mangrove plant, Bruguiera cylindrica (L.) Blume by using suppression subtractive hybridization (SSH) and bacterial functional screening. Sequencing of 51 subtracted cDNA clones that were differentially expressed in the root of B. cylindrica exposed to 20 parts per thousand (ppt) NaCl water revealed 10 tentative unique genes (TUGs) with putative functions in protein synthesis, storage and destination, metabolism, intracellular trafficking and other functions; and 9 unknown proteins. Meanwhile, the 75 cDNA sequences of B. cylindrica that conferred salinity tolerance to Escherichia coli consisted of 29 TUGs with putative functions in transportation, metabolism and other functions; and 33 with unknown functions. Both approaches yielded 42 unique sequencess that have not been reported else where to be stress related and might provide further understanding of adaptations of this plant to salinity stress. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码:117 / 122
页数:6
相关论文
共 32 条
[1]   Genetic engineering of the unsaturation of fatty acids in membrane lipids alters the tolerance of Synechocystis to salt stress [J].
Allakhverdiev, SI ;
Nishiyama, Y ;
Suzuki, I ;
Tasaka, Y ;
Murata, N .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (10) :5862-5867
[2]   ANALYSIS OF THE ROLE OF THE LATE-FLOWERING LOCUS, GL, IN THE FLOWERING OF ARABIDOPSIS-THALIANA [J].
ARAKI, T ;
KOMEDA, Y .
PLANT JOURNAL, 1993, 3 (02) :231-239
[3]  
ATLSCHUL SF, 1997, NUCLEIC ACIDS RES, V25, P3389
[4]   Molecular cloning and characterization of genes encoding BURP domain-containing protein in the mangrove, Bruguiera gymnorrhiza [J].
Banzai, T ;
Sumiya, K ;
Hanagata, N ;
Dubinsky, Z ;
Karube, I .
TREES-STRUCTURE AND FUNCTION, 2002, 16 (2-3) :87-93
[5]   Identification and characterization of mRNA transcripts differentially expressed in response to high salinity by means of differential display in the mangrove, Bruguiera gymnorrhiza [J].
Banzai, T ;
Hershkovits, G ;
Katcoff, DJ ;
Hanagata, N ;
Dubinsky, Z ;
Karube, I .
PLANT SCIENCE, 2002, 162 (04) :499-505
[6]   Involvement of GIGANTEA gene in the regulation of the cold stress response in Arabidopsis [J].
Cao, SQ ;
Ye, M ;
Jiang, ST .
PLANT CELL REPORTS, 2005, 24 (11) :683-690
[7]   Evolutionary genetics of mangroves: continental drift to recent climate change [J].
Dodd, RS ;
Rafii, ZA .
TREES-STRUCTURE AND FUNCTION, 2002, 16 (2-3) :80-86
[8]   Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings [J].
Dubos, C ;
Le Provost, G ;
Pot, D ;
Salin, F ;
Lalane, C ;
Madur, D ;
Frigerio, JM ;
Plomion, C .
TREE PHYSIOLOGY, 2003, 23 (03) :169-179
[9]   Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait.) roots [J].
Dubos, C ;
Plomion, C .
PLANT MOLECULAR BIOLOGY, 2003, 51 (02) :249-262
[10]   Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment [J].
Ewing, B ;
Hillier, L ;
Wendl, MC ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :175-185